Neobacillus jeddahensis (DSM 28281, CSUR P732, JCE)

Name: Neobacillus jeddahensis (DSM 28281, CSUR P732, JCE)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130866

Type strain

Strain Designation JCE

Culture col. no. DSM 28281 CSUR P732 JCE

NCBI tax ID(s) 1461580

Special Collections DSMZ Cadoret human gut

Links

Neobacillus jeddahensis JCE is a mesophilic prokaryote that was isolated from human feces, 24-year-old obese man.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 403775

DSM 28281

@ref 20215

Last LPSN update 2025-12-16 10:01:06

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Cytobacillaceae

Genus Neobacillus

Species Neobacillus jeddahensis

Full scientific name Neobacillus jeddahensis (Bittar et al. 2017) Patel and Gupta 2020

Synonyms (1)

Bacillus jeddahensis

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22175	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
22175	positive	growth	30	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		92.904

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	#Male
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
22175	human feces, 24-year-old obese man	Jeddah	Saudi Arabia	SAU	Asia

Taxonmaps

69479

Global distribution of 16S sequence HG931339 (>99% sequence identity) for Neobacillus jeddahensis subclade from Microbeatlas

Aquatic Samples	79
Soil Samples	830
Animal Samples	83
Plant Samples	113
Total Samples	1105

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22175	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	JCE assembly for Neobacillus jeddahensis JCE	contig	GCA_000612625	1461580.3	2619619236	1461580	48.73

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22175	Bacillus sp. JCE partial 16S rRNA gene, isolate JCE	HG931339	1517		1461580

GC content

@ref	GC-content (mol%)	Method
22175	39.42	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Neobacillus jeddahensis JCE
NCBI: GCA_000612625

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	69.80	no
125439	motility	BacteriaNetⓘ	yes	61.40	no
125439	gram_stain	BacteriaNetⓘ	variable	81.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	84.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Neobacillus jeddahensis JCE
NCBI: GCA_000612625.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	76.11	no
125438	anaerobic	anaerobicⓘ	no	95.73	no
125438	aerobic	aerobicⓘ	yes	55.52	no
125438	spore-forming	spore-formingⓘ	yes	92.90	no
125438	thermophilic	thermophileⓘ	no	89.31	no
125438	flagellated	motile2+ⓘ	yes	73.47	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Neobacillus massiliamazoniensis sp. nov., a new bacterial species isolated from stool sample of an inhabitant of the Amazon region.	Mbaye B, Tidjani Alou M, Fadlane A, Fregiere L, Alibar S, Million M, Fenollar F, Lo CI.	New Microbes New Infect	10.1016/j.nmni.2021.100900	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22175	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28281
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Neobacillus jeddahensis (DSM 28281, CSUR P732, JCE)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000612625

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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