Strain identifier
BacDive ID: 130816
Type strain: 
Species: Caldicellulosiruptor changbaiensis
Strain Designation: CBS-Z
Strain history: <- Z. Zhang, Jilin Univ., Key Lab. Molec. Enyzmol. and Eng. of Ministry of Education, Changchun, China; CBS-Z <- W. Bing {2012}
NCBI tax ID(s): 1222016 (species)
version 8.1 (current version)
General
@ref: 21874
BacDive-ID: 130816
DSM-Number: 26941
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, thermophilic, Gram-positive
description: Caldicellulosiruptor changbaiensis CBS-Z is an anaerobe, spore-forming, thermophilic bacterium that was isolated from sediment from a hot spring.
NCBI tax id
- NCBI tax id: 1222016
- Matching level: species
strain history
- @ref: 21874
- history: <- Z. Zhang, Jilin Univ., Key Lab. Molec. Enyzmol. and Eng. of Ministry of Education, Changchun, China; CBS-Z <- W. Bing {2012}
doi: 10.13145/bacdive130816.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Syntrophomonadaceae
- genus: Caldicellulosiruptor
- species: Caldicellulosiruptor changbaiensis
- full scientific name: Caldicellulosiruptor changbaiensis Bing et al. 2015
@ref: 21874
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridia, not assigned to order
family: Clostridia, not assigned to family
genus: Caldicellulosiruptor
species: Caldicellulosiruptor changbaiensis
full scientific name: Caldicellulosiruptor changbaiensis Bing et al. 2015
strain designation: CBS-Z
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 99.513
Culture and growth conditions
culture medium
- @ref: 21874
- name: ANAEROCELLUM MEDIUM (DSMZ Medium 516)
- growth: yes
- link: https://mediadive.dsmz.de/medium/516
- composition: Name: ANAEROCELLUM MEDIUM (DSMZ Medium 516) Composition: Cellobiose 4.99002 g/l Na2CO3 1.49701 g/l Na2S x 9 H2O 0.499002 g/l Yeast extract 0.499002 g/l KCl 0.329341 g/l NH4Cl 0.329341 g/l KH2PO4 0.329341 g/l CaCl2 x 2 H2O 0.329341 g/l MgCl2 x 6 H2O 0.329341 g/l HCl 0.00249501 g/l FeCl2 x 4 H2O 0.00149701 g/l Sodium resazurin 0.000499002 g/l CoCl2 x 6 H2O 0.000189621 g/l Pyridoxine hydrochloride 9.98004e-05 g/l MnCl2 x 4 H2O 9.98004e-05 g/l ZnCl2 6.98603e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l Riboflavin 4.99002e-05 g/l Thiamine HCl 4.99002e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l Biotin 1.99601e-05 g/l Folic acid 1.99601e-05 g/l H3BO3 5.98802e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Vitamin B12 9.98004e-07 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range | confidence |
|---|---|---|---|---|---|
| 21874 | positive | growth | 75 | thermophilic | |
| 69480 | thermophilic | 99.999 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 21874 | anaerobe | |
| 69480 | anaerobe | 100 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 98 |
| 69480 | yes | 97.003 |
Isolation, sampling and environmental information
isolation
- @ref: 21874
- sample type: sediment from a hot spring
- geographic location: Changbai Mountains, altitude 2189 m
- country: China
- origin.country: CHN
- continent: Asia
- latitude: 42
- longitude: 128
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Sediment |
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_29765.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_153;96_2572;97_3146;98_3949;99_29765&stattab=map
- Last taxonomy: Caldicellulosiruptor
- 16S sequence: JX280492
- Sequence Identity:
- Total samples: 9
- soil counts: 3
- aquatic counts: 4
- animal counts: 2
Safety information
risk assessment
- @ref: 21874
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21874
- description: Caldicellulosiruptor changbaiensis strain CBS-Z 16S ribosomal RNA gene, partial sequence
- accession: JX280492
- length: 1429
- database: ena
- NCBI tax ID: 1222016
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Caldicellulosiruptor changbaiensis CBS-Z | GCA_003999255 | complete | ncbi | 1222016 |
| 66792 | Caldicellulosiruptor changbaiensis strain CBS-Z | 1222016.3 | complete | patric | 1222016 |
| 66792 | Caldicellulosiruptor changbaiensis CBS-Z | 2814123041 | draft | img | 1222016 |
GC content
- @ref: 21874
- GC-content: 36.08
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 98 | no |
| motile | yes | 84.065 | no |
| flagellated | no | 81.504 | no |
| gram-positive | yes | 80.366 | no |
| anaerobic | yes | 99.272 | yes |
| aerobic | no | 98.652 | yes |
| halophile | no | 98.13 | no |
| spore-forming | no | 55.148 | no |
| thermophile | yes | 100 | yes |
| glucose-util | yes | 87.604 | no |
| glucose-ferment | no | 52.651 | no |
External links
@ref: 21874
culture collection no.: DSM 26941, CGMCC 1.5180
straininfo link
- @ref: 89304
- straininfo: 397684
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25342112 | Caldicellulosiruptor changbaiensis sp. nov., a cellulolytic and hydrogen-producing bacterium from a hot spring. | Bing W, Wang H, Zheng B, Zhang F, Zhu G, Feng Y, Zhang Z | Int J Syst Evol Microbiol | 10.1099/ijs.0.065441-0 | 2014 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gram-Positive Rods/*classification/genetics/isolation & purification, Hot Springs/*microbiology, Hydrogen/metabolism, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
| Genetics | 30834376 | Complete Genome Sequence of Caldicellulosiruptor changbaiensis CBS-Z, an Extremely Thermophilic, Cellulolytic Bacterium Isolated from a Hot Spring in China. | Mendoza C, Blumer-Schuette SE | Microbiol Resour Announc | 10.1128/MRA.00021-19 | 2019 | Phylogeny |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21874 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26941 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26941) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 89304 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397684.1 |