Name: Caldicellulosiruptor changbaiensis CBS-Z
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130816

Type strain:

Species: Caldicellulosiruptor changbaiensis

Strain Designation: CBS-Z

Culture col. no.: DSM 26941, CGMCC 1.5180

Strain history: <- Z. Zhang, Jilin Univ., Key Lab. Molec. Enyzmol. and Eng. of Ministry of Education, Changchun, China; CBS-Z <- W. Bing {2012}

NCBI tax ID(s): 1222016 (species)

SI-ID 397684

DSM 26941

Special Collections

DSMZ

Section

Caldicellulosiruptor changbaiensis CBS-Z is an anaerobe, spore-forming bacterium that was isolated from sediment from a hot spring.

spore-forming
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Syntrophomonadaceae*
	Genus	*Caldicellulosiruptor*
	Species	**Caldicellulosiruptor changbaiensis**
	Full Scientific Name (LPSN)	Caldicellulosiruptor changbaiensis Bing et al. 2015

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21874]

Culture medium

ANAEROCELLUM MEDIUM (DSMZ Medium 516)

[Ref.: #21874]

Culture medium growth

[Ref.: #21874]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21874]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21874]			growth	75 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21874]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %97.33

[Ref.: #69481]

Ability of spore formation

yes Confidence in %98

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21874]	Sample type/isolated from	sediment from a hot spring
[Ref.: #21874]	Geographic location (country and/or sea, region)	Changbai Mountains, altitude 2189 m
[Ref.: #21874]	Country	China
[Ref.: #21874]	Country ISO 3 Code	CHN
[Ref.: #21874]	Continent	Asia
[Ref.: #21874]	Geographic location	42.0000°/128.0000°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX280492 (>99% sequence identity) for Caldicellulosiruptor from Microbeatlas

Aquatic Samples	4
Soil Samples	3
Animal Samples	2
Plant Samples
Total Samples	9

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21874]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21874]	Caldicellulosiruptor changbaiensis strain CBS-Z 16S ribosomal RNA gene, partial sequence	JX280492	1429	GenBank ENA	1222016 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Caldicellulosiruptor changbaiensis CBS-Z	GCA_003999255	complete	GenBank ENA	1222016 tax ID	*
[Ref.: #66792]	Caldicellulosiruptor changbaiensis strain CBS-Z	1222016.3	complete	PATRIC	1222016 tax ID	*
[Ref.: #66792]	Caldicellulosiruptor changbaiensis CBS-Z	2814123041	draft	JGI IMG/M	1222016 tax ID	*

[Ref.: #21874]

GC-content

36.08 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Caldicellulosiruptor changbaiensis CBS-Z NCBI: GCA_003999255.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	98	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Caldicellulosiruptor changbaiensis CBS-Z NCBI: GCA_003999255.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	70.083	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	97.33	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	96.484	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	55.968	no
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	84.436	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	75.5	no

Availability in culture collections External links

[Ref.: #21874]

Culture collection no.

DSM 26941, CGMCC 1.5180

[Ref.: #89304]

SI-ID 397684

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of Caldicellulosiruptor changbaiensis CBS-Z, an Extremely Thermophilic, Cellulolytic Bacterium Isolated from a Hot Spring in China.	Mendoza C, Blumer-Schuette SE	Microbiol Resour Announc	10.1128/MRA.00021-19	2019	*
Phylogeny	Caldicellulosiruptor changbaiensis sp. nov., a cellulolytic and hydrogen-producing bacterium from a hot spring.	Bing W, Wang H, Zheng B, Zhang F, Zhu G, Feng Y, Zhang Z	Int J Syst Evol Microbiol	10.1099/ijs.0.065441-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21874

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26941

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89304

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397684.1 )

* These data were automatically processed and therefore are not curated

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