Strain identifier
BacDive ID: 130809
Type strain: 
Species: Devosia enhydra
Strain Designation: 9b
Strain history: IAM 14252 <-- NCIMB 12775 <-- ATCC 23634 <-- J. T. Staley 9b.
NCBI tax ID(s): 665118 (species)
version 8.1 (current version)
General
@ref: 21737
BacDive-ID: 130809
DSM-Number: 8908
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Devosia enhydra 9b is a mesophilic bacterium that was isolated from freshwater.
NCBI tax id
- NCBI tax id: 665118
- Matching level: species
strain history
| @ref | history |
|---|---|
| 21737 | <- ATCC; ATCC 23634 <- J. T. Staley; 9b |
| 67770 | IAM 14252 <-- NCIMB 12775 <-- ATCC 23634 <-- J. T. Staley 9b. |
doi: 10.13145/bacdive130809.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Devosiaceae
- genus: Devosia
- species: Devosia enhydra
- full scientific name: Devosia enhydra (Staley 1968) Park et al. 2016
synonyms
@ref synonym 20215 Prosthecomicrobium enhydrum 20215 Vasilyevaea enhydra
@ref: 21737
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Devosiaceae
genus: Devosia
species: Devosia enhydra
full scientific name: Devosia enhydra (Staley 1968) Park et al. 2016
strain designation: 9b
type strain: yes
Culture and growth conditions
culture medium
- @ref: 21737
- name: MMB MEDIUM (DSMZ Medium 628)
- growth: yes
- link: https://mediadive.dsmz.de/medium/628
- composition: Name: MMB MEDIUM (DSMZ Medium 628) Composition: Glucose 1.0 g/l MgSO4 x 7 H2O 0.594 g/l (NH4)2SO4 0.25 g/l Nitrilotriacetic acid 0.2 g/l Yeast extract 0.15 g/l Peptone 0.15 g/l CaCl2 x 2 H2O 0.0667 g/l ZnSO4 x 7 H2O 0.001095 g/l FeSO4 x 7 H2O 0.0005 g/l Na-EDTA 0.00025 g/l (NH4)6Mo7O24 x 4 H2O 0.000185 g/l MnSO4 x H2O 0.000154 g/l Calcium pantothenate 5e-05 g/l Pyridoxine hydrochloride 5e-05 g/l Riboflavin 5e-05 g/l Nicotinamide 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l CuSO4 x 5 H2O 3.92e-05 g/l Co(NO3)2 x 6 H2O 2.48e-05 g/l Biotin 2e-05 g/l Folic acid 2e-05 g/l Na2B4O7 x 10 H2O 1.77e-05 g/l Vitamin B12 1e-06 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 21737 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-10, Q-8
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 21737 | freshwater | Putah Creek, Davis, California | USA | USA | North America |
| 67770 | Freshwater collected from the Putah Creek overflow | Davis, CA | USA | USA | North America |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Freshwater
taxonmaps
- @ref: 69479
- File name: preview.99_1525.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_873;97_1021;98_1204;99_1525&stattab=map
- Last taxonomy: Devosia enhydra
- 16S sequence: AB681765
- Sequence Identity:
- Total samples: 184
- soil counts: 55
- aquatic counts: 81
- animal counts: 36
- plant counts: 12
Safety information
risk assessment
- @ref: 21737
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 21737 | Prosthecomicrobium enhydrum strain 9b 16S ribosomal RNA gene, partial sequence | GQ221761 | 1423 | ena | 665118 |
| 67770 | Prosthecomicrobium enhydrum gene for 16S rRNA, partial sequence, strain: NBRC 102409 | AB681765 | 1407 | ena | 665118 |
Genome sequences
- @ref: 67770
- description: Devosia enhydra ATCC 23634
- accession: GCA_900119845
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 665118
GC content
- @ref: 21737
- GC-content: 65.8
- method: Buoyant density centrifugation (BD)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 79.725 | no |
| flagellated | no | 69.744 | no |
| gram-positive | no | 96.492 | no |
| anaerobic | no | 98.335 | no |
| aerobic | yes | 90.608 | no |
| halophile | no | 92.323 | no |
| spore-forming | no | 94.389 | no |
| glucose-ferment | no | 91.325 | no |
| thermophile | no | 97.872 | no |
| glucose-util | yes | 89.305 | no |
External links
@ref: 21737
culture collection no.: DSM 8908, ATCC 23634, IAM 14252, NCIMB 12775, VKM B-1376, JCM 21106, NBRC 102409
straininfo link
- @ref: 89297
- straininfo: 38139
literature
- topic: Phylogeny
- Pubmed-ID: 20118292
- title: Reclassification of the polyphyletic genus Prosthecomicrobium to form two novel genera, Vasilyevaea gen. nov. and Bauldia gen. nov. with four new combinations: Vasilyevaea enhydra comb. nov., Vasilyevaea mishustinii comb. nov., Bauldia consociata comb. nov. and Bauldia litoralis comb. nov.
- authors: Yee B, Oertli GE, Fuerst JA, Staley JT
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.018234-0
- year: 2010
- mesh: Alphaproteobacteria/*classification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 21737 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-8908 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 8908) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 89297 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID38139.1 |