Strain identifier
BacDive ID: 130807
Type strain: 
Species: Aminobacterium thunnarium
Strain history: M.-L. Fardeau; IRD-MIO, Aix-Marseille Univ., France; OTA 102.
NCBI tax ID(s): 1482737 (species)
version 8.1 (current version)
General
@ref: 21471
BacDive-ID: 130807
DSM-Number: 27500
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Aminobacterium thunnarium DSM 27500 is an anaerobe, mesophilic bacterium that was isolated from sludge from anaerobic sequencing batch reactor treating wastewater from cooking tuna.
NCBI tax id
- NCBI tax id: 1482737
- Matching level: species
strain history
| @ref | history |
|---|---|
| 21471 | <- M. L. Fardeau, Lab. Microbiol. de l'IRD/ESIL, Univ. de Provence et de la Méditerranée, Marseille, France; OTA 102 <- O. Hamdi {2013} |
| 67770 | M.-L. Fardeau; IRD-MIO, Aix-Marseille Univ., France; OTA 102. |
doi: 10.13145/bacdive130807.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/synergistota
- domain: Bacteria
- phylum: Synergistota
- class: Synergistia
- order: Synergistales
- family: Synergistaceae
- genus: Aminobacterium
- species: Aminobacterium thunnarium
- full scientific name: Aminobacterium thunnarium Hamdi et al. 2015
@ref: 21471
domain: Bacteria
phylum: Synergistetes
class: Synergistia
order: Synergistales
family: Synergistaceae
genus: Aminobacterium
species: Aminobacterium thunnarium
full scientific name: Aminobacterium thunnarium Hamdi et al. 2015
type strain: yes
Culture and growth conditions
culture medium
- @ref: 21471
- name: AMINOBACTERIUM MEDIUM (DSMZ Medium 846a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/846a
- composition: Name: AMINOBACTERIUM MEDIUM (DSMZ Medium 846a) Composition: NaCl 19.9402 g/l MgCl2 x 6 H2O 2.99103 g/l Yeast extract 1.99402 g/l Na2CO3 1.49551 g/l L-Serine 1.04686 g/l L-Cysteine HCl x H2O 0.498504 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.498504 g/l NH4Cl 0.299103 g/l KH2PO4 0.299103 g/l K2HPO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Riboflavin 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 21471 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 21471
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 21471 | sludge from anaerobic sequencing batch reactor treating wastewater from cooking tuna | Tunisia | TUN | Africa |
| 67770 | Anaerobic sequencing batch reactor treating wastewater from cooking tuna |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Bioreactor | |
| #Engineered | #Waste | #Wastewater |
| #Environmental | #Terrestrial | #Mud (Sludge) |
| #Condition | #Anoxic (anaerobic) |
taxonmaps
- @ref: 69479
- File name: preview.99_25198.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_365;96_1576;97_15294;98_18943;99_25198&stattab=map
- Last taxonomy: Aminobacterium thunnarium subclade
- 16S sequence: KJ159211
- Sequence Identity:
- Total samples: 2427
- soil counts: 532
- aquatic counts: 1298
- animal counts: 504
- plant counts: 93
Safety information
risk assessment
- @ref: 21471
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21471
- description: Aminobacterium thunnarium strain OTA 102 16S ribosomal RNA gene, partial sequence
- accession: KJ159211
- length: 1539
- database: ena
- NCBI tax ID: 1482737
GC content
- @ref: 21471
- GC-content: 41.7
- method: high performance liquid chromatography (HPLC)
External links
@ref: 21471
culture collection no.: DSM 27500, JCM 19320, OTA 102
straininfo link
- @ref: 89295
- straininfo: 404985
literature
- topic: Phylogeny
- Pubmed-ID: 25406236
- title: Aminobacterium thunnarium sp. nov., a mesophilic, amino acid-degrading bacterium isolated from an anaerobic sludge digester, pertaining to the phylum Synergistetes.
- authors: Hamdi O, Ben Hania W, Postec A, Bouallagui H, Hamdi M, Bonin P, Ollivier B, Fardeau ML
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.068965-0
- year: 2014
- mesh: Amino Acids/*metabolism, Bacteria, Anaerobic/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermentation, Gram-Positive Bacteria/*classification/genetics/isolation & purification, Ketoglutaric Acids, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Tunisia
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21471 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27500 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27500) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89295 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404985.1 |