Strain identifier
BacDive ID: 1308
Type strain: 
Species: Lederbergia graminis
Strain Designation: YC6957
Strain history: <- Y. R. Chung, Gyeongsang Natl. Univ. (GNU), Jinju, Korea; YC6957 <- F. Bibi
NCBI tax ID(s): 735518 (species)
version 8.1 (current version)
General
@ref: 16194
BacDive-ID: 1308
DSM-Number: 22162
keywords: 16S sequence, Bacteria, mesophilic
description: Lederbergia graminis YC6957 is a mesophilic bacterium that was isolated from internal tissue of roots of Elymus mollis , a coastal sand-dune plant.
NCBI tax id
- NCBI tax id: 735518
- Matching level: species
strain history
- @ref: 16194
- history: <- Y. R. Chung, Gyeongsang Natl. Univ. (GNU), Jinju, Korea; YC6957 <- F. Bibi
doi: 10.13145/bacdive1308.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Lederbergia
- species: Lederbergia graminis
- full scientific name: Lederbergia graminis (Bibi et al. 2011) Gupta et al. 2020
synonyms
- @ref: 20215
- synonym: Bacillus graminis
@ref: 16194
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Lederbergia
species: Lederbergia graminis
full scientific name: Lederbergia graminis (Bibi et al. 2011) Gupta et al. 2020
strain designation: YC6957
type strain: yes
Culture and growth conditions
culture medium
- @ref: 16194
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220; with strain-specific modifications) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l MnSO4 0.01 g/l Distilled water
culture temp
- @ref: 16194
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 16194
- sample type: internal tissue of roots of Elymus mollis (Trin.), a coastal sand-dune plant
- host species: Elymus mollis
- geographic location: Namhae Island (34° 50' 15.62'' N 127° 53' 32.72'' E)
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
- latitude: 34.7252
- longitude: 127.895
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
Safety information
risk assessment
- @ref: 16194
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16194
- description: Bacillus graminis strain YC6957 16S ribosomal RNA gene, partial sequence
- accession: GU322908
- length: 1422
- database: ena
- NCBI tax ID: 735518
GC content
- @ref: 16194
- GC-content: 41.6
- method: high performance liquid chromatography (HPLC)
External links
@ref: 16194
culture collection no.: DSM 22162, KACC 13779
straininfo link
- @ref: 70959
- straininfo: 399384
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 20656804 | Bacillus graminis sp. nov., an endophyte isolated from a coastal dune plant. | Bibi F, Chung EJ, Jeon CO, Chung YR | Int J Syst Evol Microbiol | 10.1099/ijs.0.023820-0 | 2010 | Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Elymus/*microbiology, Endophytes/classification/genetics/isolation & purification, Fatty Acids/chemistry, Molecular Sequence Data, Peptidoglycan/chemistry, *Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Republic of Korea, Salt-Tolerant Plants/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Enzymology |
| Phylogeny | 24277860 | Bacillus panacisoli sp. nov., isolated from ginseng soil. | Choi JH, Cha CJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.054320-0 | 2013 | Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Panax/*microbiology, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16194 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22162) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22162 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 70959 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID399384.1 | StrainInfo: A central database for resolving microbial strain identifiers |