Strain identifier

BacDive ID: 130711

Type strain: Yes

Species: Streptococcus parasuis

Strain Designation: SUT-286

Strain history: R. Nomoto; Kobe Univ., Japan; SUT-286.

NCBI tax ID(s): 1501662 (species)

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General

@ref: 21944

BacDive-ID: 130711

DSM-Number: 29126

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, animal pathogen

description: Streptococcus parasuis SUT-286 is a microaerophile, mesophilic animal pathogen that was isolated from saliva from clinically healthy pig.

NCBI tax id

  • NCBI tax id: 1501662
  • Matching level: species

strain history

@refhistory
21944<- R. Nomoto, Univ. Kobe, Japan; SUT-286
67770R. Nomoto; Kobe Univ., Japan; SUT-286.

doi: 10.13145/bacdive130711.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus parasuis
  • full scientific name: Streptococcus parasuis Nomoto et al. 2015

@ref: 21944

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus parasuis

full scientific name: Streptococcus parasuis Nomoto et al. 2015

strain designation: SUT-286

type strain: yes

Morphology

colony morphology

  • @ref: 21944
  • type of hemolysis: alpha
  • hemolysis ability: 1
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21944COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
21944TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21944positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 21944
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838129016arginine+hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838127082trehalose+builds acid from
6838116634raffinose+builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin+builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen+builds acid from
6838127941pullulan+builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
21944catalase-1.11.1.6
21944cytochrome-c oxidase-1.9.3.1
68381urease-3.5.1.5
68381beta-mannosidase+3.2.1.25
68381glycyl tryptophan arylamidase+
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase+3.4.19.3
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alpha-galactosidase+3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase+3.5.3.6

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
21944+++-++---+/-+++--++++/-+-+-+++----+-
21944+++-+----++++--+++++-+-+++----+-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
21944saliva from clinically healthy pigIbaraki PrefectureJapanJPNAsia
67770Saliva of a clinically healthy pig

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Suidae (Pig,Swine)
#Host Body Product#Oral cavity and Airways#Saliva

taxonmaps

  • @ref: 69479
  • File name: preview.99_1397.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4;96_8;97_8;98_1104;99_1397&stattab=map
  • Last taxonomy: Streptococcus
  • 16S sequence: AB936273
  • Sequence Identity:
  • Total samples: 6270
  • soil counts: 105
  • aquatic counts: 396
  • animal counts: 5679
  • plant counts: 90

Safety information

risk assessment

  • @ref: 21944
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21944
  • description: Streptococcus parasuis gene for 16S ribosomal RNA, partial sequence
  • accession: AB936273
  • length: 1411
  • database: ena
  • NCBI tax ID: 1501662

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus parasuis DSM 291262928335100draftimg1501662
66792Streptococcus parasuis SUT-286GCA_021654455completencbi1501662

GC content

@refGC-contentmethod
2194439.8sequence analysis
6777039.8genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno95.024no
gram-positiveyes94.309no
anaerobicno97.33yes
aerobicno97.822yes
halophileyes75.006no
spore-formingno95.382no
motileno95.804no
glucose-fermentyes87.799no
thermophileno99.568no
glucose-utilyes90.335no

External links

@ref: 21944

culture collection no.: DSM 29126, JCM 30273

straininfo link

  • @ref: 89218
  • straininfo: 394688

literature

  • topic: Phylogeny
  • Pubmed-ID: 25385995
  • title: Reappraisal of the taxonomy of Streptococcus suis serotypes 20, 22 and 26: Streptococcus parasuis sp. nov.
  • authors: Nomoto R, Maruyama F, Ishida S, Tohya M, Sekizaki T, Osawa R
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.067116-0
  • year: 2014
  • mesh: Animals, DNA, Bacterial/genetics, Genes, Bacterial, Immune Sera/immunology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Saliva/immunology, Sequence Analysis, DNA, Serogroup, Streptococcus/*classification, Streptococcus suis/*classification, Swine/immunology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21944Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29126Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29126)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68381Automatically annotated from API rID32STR
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89218Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID394688.1