Streptococcus parasuis (DSM 29126, JCM 30273, SUT-286)

Name: Streptococcus parasuis (DSM 29126, JCM 30273, SUT-286)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130711

Type strain

Strain Designation SUT-286

Culture col. no. DSM 29126 JCM 30273 SUT-286

NCBI tax ID(s) 1501662

Special Collections DSMZ JCM

Links

Streptococcus parasuis SUT-286 is a microaerophile, mesophilic animal pathogen that was isolated from saliva from clinically healthy pig.

microaerophile mesophilic animal pathogen genome sequence 16S sequence

Name and taxonomic classification

SI-ID 394688

LMG 28724,DSM 29126,JCM 30273

@ref 20215

Last LPSN update 2025-12-16 10:01:03

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Streptococcaceae

Genus Streptococcus

Species Streptococcus parasuis

Full scientific name Streptococcus parasuis Nomoto et al. 2015

Morphology

Cell morphology

@ref	Motility	Confidence
125438		92.5

Colony morphology

@ref	Type of hemolysis	Hemolysis ability	Incubation period
21944	alpha	1	1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21944	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
21944	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
21944	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
21944	microaerophile
125439	obligate aerobe	95.6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68381	40585 ChEBI	alpha-cyclodextrin	+	builds acid from	from API rID32STR
68381	29016 ChEBI	arginine	+	hydrolysis	from API rID32STR
68381	18333 ChEBI	D-arabitol	-	builds acid from	from API rID32STR
68381	16899 ChEBI	D-mannitol	-	builds acid from	from API rID32STR
68381	16988 ChEBI	D-ribose	-	builds acid from	from API rID32STR
68381	16443 ChEBI	D-tagatose	-	builds acid from	from API rID32STR
68381	28087 ChEBI	glycogen	+	builds acid from	from API rID32STR
68381	606565 ChEBI	hippurate	-	hydrolysis	from API rID32STR
68381	30849 ChEBI	L-arabinose	-	builds acid from	from API rID32STR
68381	17306 ChEBI	maltose	+	builds acid from	from API rID32STR
68381	6731 ChEBI	melezitose	-	builds acid from	from API rID32STR
68381	28053 ChEBI	melibiose	-	builds acid from	from API rID32STR
68381	320055 ChEBI	methyl beta-D-glucopyranoside	-	builds acid from	from API rID32STR
68381	27941 ChEBI	pullulan	+	builds acid from	from API rID32STR
68381	16634 ChEBI	raffinose	+	builds acid from	from API rID32STR
68381	30911 ChEBI	sorbitol	-	builds acid from	from API rID32STR
68381	17992 ChEBI	sucrose	+	builds acid from	from API rID32STR
68381	27082 ChEBI	trehalose	+	builds acid from	from API rID32STR
68381	16199 ChEBI	urea	-	hydrolysis	from API rID32STR

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68381	15688 ChEBI	acetoin		from API rID32STR

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
68381	15688 ChEBI	acetoin	+	from API rID32STR

Enzymes

@ref	Value	Activity	Ec
68381	Alanyl-Phenylalanyl-Proline arylamidase	+		from API rID32STR
68381	alpha-galactosidase	+	3.2.1.22	from API rID32STR
68381	arginine dihydrolase	+	3.5.3.6	from API rID32STR
68381	beta-glucosidase	+	3.2.1.21	from API rID32STR
68381	beta-glucuronidase	-	3.2.1.31	from API rID32STR
68381	beta-mannosidase	+	3.2.1.25	from API rID32STR
21944	catalase	-	1.11.1.6
21944	cytochrome-c oxidase	-	1.9.3.1
68381	glycyl tryptophan arylamidase	+		from API rID32STR
68381	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32STR
68381	pyrrolidonyl arylamidase	+	3.4.19.3	from API rID32STR
68381	urease	-	3.5.1.5	from API rID32STR

API rID32STR

@ref	ADH (Arg)	beta GLU	beta GAR	beta GUR	alpha GAL	PAL	RIB	MAN	SOR	LAC	TRE	RAF	SAC	LARA	DARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	HIP	GLYG	PUL	MAL	MEL	MLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	TAG	beta MAN	URE
21944	+	+	+	-	+	+	-	-	-	+/-	+	+	+	-	-	+	+	+	+/-	+	-	+	-	+	+	+	-	-	-	-	+	-
21944	+	+	+	-	+	-	-	-	-	+	+	+	+	-	-	+	+	+	+	+	-	+	-	+	+	+	-	-	-	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Suidae (Pig,Swine)
#Host Body Product	#Oral cavity and Airways	#Saliva

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
21944	saliva from clinically healthy pig	Ibaraki Prefecture	Japan	JPN	Asia
67770	Saliva of a clinically healthy pig

Taxonmaps

69479

Global distribution of 16S sequence AB936273 (>99% sequence identity) for Streptococcus from Microbeatlas

Aquatic Samples	396
Soil Samples	105
Animal Samples	5679
Plant Samples	90
Total Samples	6270

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
21944		2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2165445v1 assembly for Streptococcus parasuis SUT-286	complete	GCA_021654455	1501662.11	8111854439	1501662	99.08
124043	ASM4054548v1 assembly for Streptococcus parasuis DSM 29126	contig	GCA_040545485		2928335100	1501662	68.12

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21944	Streptococcus parasuis gene for 16S ribosomal RNA, partial sequence	AB936273	1411		1501662

GC content

@ref	GC-content (mol%)	Method
21944	39.8	sequence analysis
67770	39.8	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptococcus parasuis DSM 29126
IMG: 2928335100

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	87.60	no
125439	motility	BacteriaNetⓘ	no	66.00	no
125439	gram_stain	BacteriaNetⓘ	positive	88.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptococcus parasuis SUT-286
NCBI: GCA_021654455.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.40	no
125438	anaerobic	anaerobicⓘ	no	90.16	yes
125438	aerobic	aerobicⓘ	no	96.23	yes
125438	spore-forming	spore-formingⓘ	no	85.14	no
125438	thermophilic	thermophileⓘ	no	94.94	no
125438	flagellated	motile2+ⓘ	no	92.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Culturomics of the pig tonsil microbiome identifies new species and an untapped source of novel antimicrobials.	de Oliveira IMF, Fredriksen S, Gutierrez MF, Harmsen HJM, Boekhorst J, van Baarlen P, Wells JM.	Microbiome	10.1186/s40168-025-02064-3	2025
Enzymology	Comparative genomics of Rothia species reveals diversity in novel biosynthetic gene clusters and ecological adaptation to different eukaryotic hosts and host niches.	Oliveira IMF, Ng DYK, van Baarlen P, Stegger M, Andersen PS, Wells JM.	Microb Genom	10.1099/mgen.0.000854	2022
Phylogeny	Whole-Genome Sequencing Evaluation of MALDI-TOF MS as a Species Identification Tool for Streptococcus suis.	Werinder A, Aspan A, Soderlund R, Backhans A, Sjolund M, Guss B, Jacobson M.	J Clin Microbiol	10.1128/jcm.01297-21	2021
Phylogeny	Reappraisal of the taxonomy of Streptococcus suis serotypes 20, 22 and 26: Streptococcus parasuis sp. nov.	Nomoto R, Maruyama F, Ishida S, Tohya M, Sekizaki T, Osawa R	Int J Syst Evol Microbiol	10.1099/ijs.0.067116-0	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21944	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29126
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68381	Automatically annotated from API rID32STR .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptococcus parasuis (DSM 29126, JCM 30273, SUT-286)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API rID32STR

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_021654455

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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