Strain identifier

BacDive ID: 130679

Type strain: Yes

Species: Sphingomonas naasensis

Strain Designation: KIS18-15

Strain history: <- KACC <- S.-J. Kim et al., Agricultural Microbiology Division, National Academy of Agricultural Science, Suwon

NCBI tax ID(s): 1344951 (species)

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General

@ref: 21790

BacDive-ID: 130679

DSM-Number: 100060

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile

description: Sphingomonas naasensis KIS18-15 is a mesophilic, motile bacterium that was isolated from forest soil.

NCBI tax id

  • NCBI tax id: 1344951
  • Matching level: species

strain history

  • @ref: 21790
  • history: <- KACC <- S.-J. Kim et al., Agricultural Microbiology Division, National Academy of Agricultural Science, Suwon

doi: 10.13145/bacdive130679.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Sphingomonadaceae
  • genus: Sphingomonas
  • species: Sphingomonas naasensis
  • full scientific name: Sphingomonas naasensis Kim et al. 2014

@ref: 21790

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Pseudomonadales

family: Sphingomonadaceae

genus: Sphingomonas

species: Sphingomonas naasensis

full scientific name: Sphingomonas naasensis Kim et al. 2014

strain designation: KIS18-15

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes92.074
6948099.806negative

Culture and growth conditions

culture medium

  • @ref: 21790
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 21790
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.977

Isolation, sampling and environmental information

isolation

  • @ref: 21790
  • sample type: forest soil
  • geographic location: Baengnyeong Island
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 21790
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21790
  • description: Sphingomonas naasensis strain KIS18-15 from South Korea 16S ribosomal RNA gene, partial sequence
  • accession: KC735149
  • length: 1426
  • database: ena
  • NCBI tax ID: 1344951

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Sphingomonas naasensis DSM 100060GCA_011762145scaffoldncbi1344951
66792Sphingomonas naasensis KIS18-15GCA_004792695scaffoldncbi1344951
66792Sphingomonas naasensis strain DSM 1000601344951.4wgspatric1344951
66792Sphingomonas naasensis DSM 1000602828413566draftimg1344951

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes80.413no
flagellatedno80.387no
gram-positiveno97.162no
anaerobicno99.164no
aerobicyes92.108no
halophileno94.958no
spore-formingno93.302no
glucose-utilyes89.191no
thermophileno98.626yes
glucose-fermentno89.87no

External links

@ref: 21790

culture collection no.: DSM 100060, KACC 16534, NBRC 108943

straininfo link

  • @ref: 89186
  • straininfo: 407706

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24425812Sphingomonas aerophila sp. nov. and Sphingomonas naasensis sp. nov., isolated from air and soil, respectively.Kim SJ, Moon JY, Lim JM, Ahn JH, Weon HY, Ahn TY, Kwon SWInt J Syst Evol Microbiol10.1099/ijs.0.055269-02013*Air Microbiology, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Spermidine/chemistry, Sphingomonas/*classification/genetics/isolation & purification, Ubiquinone/chemistryGenetics
Phylogeny25604345Sphingomonas gei sp. nov., isolated from roots of Geum aleppicum.Zhu L, Si M, Li C, Xin K, Chen C, Shi X, Huang R, Zhao L, Shen X, Zhang LInt J Syst Evol Microbiol10.1099/ijs.0.0000742015Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geum/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spermidine/analogs & derivatives/chemistry, Sphingomonas/*classification/genetics/isolation & purification, Ubiquinone/chemistryGenetics
Phylogeny35639588Sphingomonas psychrotolerans sp. nov., isolated from root surface of Leontopodium leontopodioides in the Tianshan Mountains, Xinjiang, China.Luo Y, Zhou M, Wang F, Sheng HInt J Syst Evol Microbiol10.1099/ijsem.0.0053962022*Asteraceae, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Spermidine/chemistry, *SphingomonasTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21790Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100060Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100060)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
89186Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407706.1