Strain identifier

BacDive ID: 130677

Type strain: Yes

Species: Sphingomonas canadensis

Strain history: <- LMG <- W.-R. Abraham, HZI, Braunschweig, Germany <- J. Smit, Univ. British Columbia, Vancouver, Canada; FWC47

NCBI tax ID(s): 1219257 (species)

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General

@ref: 21788

BacDive-ID: 130677

DSM-Number: 29393

keywords: 16S sequence, Bacteria, aerobe, mesophilic, spiral-shaped

description: Sphingomonas canadensis DSM 29393 is an aerobe, mesophilic, spiral-shaped bacterium that was isolated from pulp mill sludge pond.

NCBI tax id

  • NCBI tax id: 1219257
  • Matching level: species

strain history

  • @ref: 21788
  • history: <- LMG <- W.-R. Abraham, HZI, Braunschweig, Germany <- J. Smit, Univ. British Columbia, Vancouver, Canada; FWC47

doi: 10.13145/bacdive130677.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Sphingomonadaceae
  • genus: Sphingomonas
  • species: Sphingomonas canadensis
  • full scientific name: Sphingomonas canadensis Abraham et al. 2013

@ref: 21788

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Pseudomonadales

family: Sphingomonadaceae

genus: Sphingomonas

species: Sphingomonas canadensis

full scientific name: Sphingomonas canadensis Abraham et al. 2013

type strain: yes

Morphology

cell morphology

  • @ref: 30969
  • cell length: 1.4 µm
  • cell width: 0.45 µm
  • cell shape: spiral-shaped

colony morphology

  • @ref: 62925
  • incubation period: 2 days

pigmentation

  • @ref: 30969
  • production: yes

multimedia

  • @ref: 21788
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_29393.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 21788
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21788positivegrowth28mesophilic
30969positiveoptimum30mesophilic
62925positivegrowth30mesophilic

culture pH

@refabilitytypepH
30969positivegrowth6.0-8.0
30969positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30969aerobe
62925aerobe

halophily

@refsaltgrowthtested relationconcentration
30969NaClpositivegrowth0-3 %
30969NaClpositiveoptimum1 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
30969620642,3-butanediol+carbon source
3096916449alanine+carbon source
3096935391aspartate+carbon source
3096917240itaconate+carbon source
3096917306maltose+carbon source
3096916634raffinose+carbon source
3096953423tween 40+carbon source
309694853esculin+hydrolysis

enzymes

@refvalueactivityec
30969acid phosphatase+3.1.3.2
30969alkaline phosphatase+3.1.3.1
30969catalase+1.11.1.6
30969cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
21788pulp mill sludge pondBritish Colombia, Howe SoundCanadaCANNorth America
62925Waste water,pulp mill sludge pondBritish Columbia,Howe SoundCanadaCANNorth America

isolation source categories

Cat1Cat2Cat3
#Engineered#Industrial
#Engineered#Industrial#Engineered product
#Environmental#Terrestrial#Mud (Sludge)
#Environmental#Aquatic#Pond (small)

Safety information

risk assessment

  • @ref: 21788
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21788
  • description: Sphingomonas canadensis partial 16S rRNA gene, type strain FWC47T
  • accession: HE974351
  • length: 1411
  • database: ena
  • NCBI tax ID: 1219257

GC content

  • @ref: 21788
  • GC-content: 67.1

External links

@ref: 21788

culture collection no.: DSM 29393, CCUG 62982, LMG 27141, FWC 47

straininfo link

  • @ref: 89184
  • straininfo: 381061

literature

  • topic: Phylogeny
  • Pubmed-ID: 23456806
  • title: Prosthecate sphingomonads: proposal of Sphingomonas canadensis sp. nov.
  • authors: Abraham WR, Estrela AB, Rohde M, Smit J, Vancanneyt M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.048678-0
  • year: 2013
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Polyamines/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/analogs & derivatives/analysis, Sphingomonas/*classification/genetics/isolation & purification, Ubiquinone/analogs & derivatives/analysis
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21788Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29393Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29393)
30969Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172729928776041
62925Curators of the CCUGhttps://www.ccug.se/strain?id=62982Culture Collection University of Gothenburg (CCUG) (CCUG 62982)
89184Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID381061.1