Name: Sphingomonas canadensis DSM 29393
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130677

Type strain:

Species: Sphingomonas canadensis

Culture col. no.: DSM 29393, CCUG 62982, LMG 27141, FWC 47

Strain history: <- LMG <- W.-R. Abraham, HZI, Braunschweig, Germany <- J. Smit, Univ. British Columbia, Vancouver, Canada; FWC47

NCBI tax ID(s): 1219257 (species)

SI-ID 381061

LMG 27141, CCUG 62982, DSM 29393

Section

Sphingomonas canadensis DSM 29393 is an aerobe, mesophilic, spiral-shaped bacterium that was isolated from pulp mill sludge pond.

spiral-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingomonas*
	Species	**Sphingomonas canadensis**
	Full Scientific Name (LPSN)	Sphingomonas canadensis Abraham et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30969]	Cell length	1.4 µm

[Ref.: #30969]	Cell width	0.45 µm

[Ref.: #30969]	Cell shape	spiral-shaped

[Ref.: #62925]

Incubation period

2 days

[Ref.: #30969]

Pigment production

yes

Multimedia content

[Ref.: #21788]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21788]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #21788]

Culture medium growth

[Ref.: #21788]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21788]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21788]	growth	28 °C
[Ref.: #30969]	optimum	30 °C
[Ref.: #62925]	growth	30 °C

[Ref.: #21788]	Temperature range	mesophilic
[Ref.: #30969]	Temperature range	mesophilic
[Ref.: #62925]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30969]			optimum	7
[Ref.: #30969]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30969]	Oxygen tolerance	aerobe
[Ref.: #62925]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30969]		NaCl		growth	0-3	%
[Ref.: #30969]		NaCl		optimum	1	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30969]	2,3-butanediol ChEBI	+	carbon source
[Ref.: #30969]	alanine ChEBI	+	carbon source
[Ref.: #30969]	aspartate ChEBI	+	carbon source
[Ref.: #30969]	esculin ChEBI	+	hydrolysis
[Ref.: #30969]	itaconate ChEBI	+	carbon source
[Ref.: #30969]	maltose ChEBI	+	carbon source
[Ref.: #30969]	raffinose ChEBI	+	carbon source
[Ref.: #30969]	tween 40 ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30969]	acid phosphatase	+	3.1.3.2
[Ref.: #30969]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30969]	catalase	+	1.11.1.6
[Ref.: #30969]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21788]	Sample type/isolated from	pulp mill sludge pond
[Ref.: #21788]	Geographic location (country and/or sea, region)	British Colombia, Howe Sound
[Ref.: #21788]	Country	Canada
[Ref.: #21788]	Country ISO 3 Code	CAN
[Ref.: #21788]	Continent	North America

[Ref.: #62925]	Sample type/isolated from	Waste water,pulp mill sludge pond
[Ref.: #62925]	Geographic location (country and/or sea, region)	British Columbia,Howe Sound
[Ref.: #62925]	Country	Canada
[Ref.: #62925]	Country ISO 3 Code	CAN
[Ref.: #62925]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	-
#Engineered	#Industrial	#Engineered product
#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Aquatic	#Pond (small)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21788]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21788]	Sphingomonas canadensis partial 16S rRNA gene, type strain FWC47T	HE974351	1411	ENA	1219257 tax ID

[Ref.: #21788]

GC-content

67.1 mol%

Availability in culture collections External links

[Ref.: #21788]

Culture collection no.

DSM 29393, CCUG 62982, LMG 27141, FWC 47

[Ref.: #89184]

SI-ID 381061

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Prosthecate sphingomonads: proposal of Sphingomonas canadensis sp. nov.	Abraham WR, Estrela AB, Rohde M, Smit J, Vancanneyt M	Int J Syst Evol Microbiol	10.1099/ijs.0.048678-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21788

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29393

#30969

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27299 (see below)

#62925 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62982

#89184

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID381061.1 )

#27299

IJSEM 3214 2013 ( DOI 10.1099/ijs.0.048678-0 , PubMed 23456806 )

* These data were automatically processed and therefore are not curated

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