General

@ref: 21719

BacDive-ID: 130517

DSM-Number: 29321

keywords: 16S sequence, Bacteria, psychrophilic

description: Paenibacillus tibetensis SSB001 is a psychrophilic bacterium that was isolated from soil, alpine swamp meadow.

NCBI tax id

• NCBI tax id: 1561923
• Matching level: species

strain history

• @ref: 21719
• history: <- L. Han, Chinese Acad. Sci. (CAS), Beijing; SSB001

doi: 10.13145/bacdive130517.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/bacillota
• domain: Bacteria
• phylum: Bacillota
• class: Bacilli
• order: Caryophanales
• family: Paenibacillaceae
• genus: Paenibacillus
• species: Paenibacillus tibetensis
• full scientific name: Paenibacillus tibetensis Han et al. 2015

@ref: 21719

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus tibetensis

full scientific name: Paenibacillus tibetensis Han et al. 2015

strain designation: SSB001

type strain: yes

Culture and growth conditions

culture medium

• @ref: 21719
• name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
• growth: yes
• link: https://mediadive.dsmz.de/medium/220
• composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

culture temp

• @ref: 21719
• growth: positive
• type: growth
• temperature: 20
• range: psychrophilic

Isolation, sampling and environmental information

isolation

• @ref: 21719
• sample type: soil, alpine swamp meadow
• geographic location: Tibet, Sheglya Mountain (29° 36' 21'' N 94° 36' 23'' E )
• country: China
• origin.country: CHN
• continent: Asia
• latitude: 29.6058
• longitude: 94.6064

isolation source categories

taxonmaps

• @ref: 69479
• File name: preview.99_3828.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_113;97_120;98_2917;99_3828&stattab=map
• Last taxonomy: Paenibacillus
• 16S sequence: KM522843
• Sequence Identity:
• Total samples: 1000
• soil counts: 598
• aquatic counts: 113
• animal counts: 203
• plant counts: 86

Safety information

risk assessment

• @ref: 21719
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

• @ref: 21719
• description: Paenibacillus tibetensis strain SSB001 16S ribosomal RNA gene, partial sequence
• accession: KM522843
• length: 1474
• database: ena
• NCBI tax ID: 1561923

GC content

• @ref: 21719
• GC-content: 40.18
• method: high performance liquid chromatography (HPLC)

External links

@ref: 21719

culture collection no.: DSM 29321, ACCC 19728

straininfo link

• @ref: 89039
• straininfo: 400771

literature

• topic: Phylogeny
• Pubmed-ID: 25713036
• title: Paenibacillus tibetensis sp. nov., a psychrophilic bacterium isolated from alpine swamp meadow soil.
• authors: Han LL, He JZ, Zheng YM, Zeng J, Zhang LM
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijs.0.000141
• year: 2015
• mesh: Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Genes, Bacterial, Molecular Sequence Data, Paenibacillus/*classification/genetics/isolation & purification, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Tibet, Vitamin K 2/analogs & derivatives/chemistry, *Wetlands
• topic2: Genetics

Reference