Strain identifier
BacDive ID: 13050
Type strain:
Species: Pseudoalteromonas atlantica
Strain history: CIP <- 1959, NCIB, Pseudomonas atlantica <- W. Yaphe, Canada
NCBI tax ID(s): 288 (species)
General
@ref: 2849
BacDive-ID: 13050
DSM-Number: 6840
keywords: 16S sequence, Bacteria, Gram-negative, motile, rod-shaped
description: Pseudoalteromonas atlantica DSM 6840 is a Gram-negative, motile, rod-shaped bacterium that was isolated from Unknown source.
NCBI tax id
- NCBI tax id: 288
- Matching level: species
strain history
@ref | history |
---|---|
2849 | <- LMG; LMG 2139 <- CIP; CIP 59.31 <- NCIB (NCIMB); NCIB 8959 (NCIMB 8959) <- W. Yaphe, ARL |
116535 | CIP <- 1959, NCIB, Pseudomonas atlantica <- W. Yaphe, Canada |
doi: 10.13145/bacdive13050.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Pseudoalteromonadaceae
- genus: Pseudoalteromonas
- species: Pseudoalteromonas atlantica
- full scientific name: Pseudoalteromonas atlantica (Akagawa-Matsushita et al. 1992) Gauthier et al. 1995
synonyms
- @ref: 20215
- synonym: Alteromonas atlantica
@ref: 2849
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudoalteromonadaceae
genus: Pseudoalteromonas
species: Pseudoalteromonas atlantica
full scientific name: Pseudoalteromonas atlantica (Akagawa-Matsushita et al. 1992) Gauthier et al. 1995
type strain: no
Morphology
cell morphology
- @ref: 116535
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
2849 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
33394 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |
116535 | CIP Medium 13 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13 | |
116535 | CIP Medium 186 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=186 |
culture temp
@ref | growth | type | temperature |
---|---|---|---|
2849 | positive | growth | 20 |
33394 | positive | growth | 22 |
116535 | positive | growth | 5-37 |
116535 | no | growth | 41 |
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
116535 | 16947 | citrate | - | carbon source |
116535 | 4853 | esculin | + | hydrolysis |
116535 | 17632 | nitrate | - | reduction |
116535 | 16301 | nitrite | - | reduction |
antibiotic resistance
- @ref: 116535
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
- @ref: 116535
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
116535 | oxidase | + | |
116535 | beta-galactosidase | + | 3.2.1.23 |
116535 | alcohol dehydrogenase | - | 1.1.1.1 |
116535 | gelatinase | + | |
116535 | amylase | + | |
116535 | DNase | + | |
116535 | caseinase | + | 3.4.21.50 |
116535 | catalase | + | 1.11.1.6 |
116535 | tween esterase | + | |
116535 | lecithinase | - | |
116535 | lipase | + | |
116535 | lysine decarboxylase | - | 4.1.1.18 |
116535 | ornithine decarboxylase | - | 4.1.1.17 |
116535 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | + | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | + | 3.2.1.22 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116535 | - | + | + | + | - | + | + | - | + | + | + | + | + | + | - | + | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116535 | + | - | + | + | - | - | - | + | - | + | + | + | - | + | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | + | - | + | + | - | - | + | - |
Isolation, sampling and environmental information
isolation
- @ref: 116535
- sample type: Unknown source
taxonmaps
- @ref: 69479
- File name: preview.99_1002.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_57;96_122;97_129;98_145;99_1002&stattab=map
- Last taxonomy: Pseudoalteromonas
- 16S sequence: KF019206
- Sequence Identity:
- Total samples: 3222
- soil counts: 24
- aquatic counts: 2792
- animal counts: 384
- plant counts: 22
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
2849 | 1 | Risk group (German classification) |
116535 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Pseudoalteromonas atlantica 16S ribosomal RNA gene, partial sequence | KF019206 | 1353 | nuccore | 288 |
2849 | Pseudoalteromonas atlantica gene for 16S rRNA, partial sequence, strain: NBRC 103033 | AB681913 | 1461 | nuccore | 288 |
External links
@ref: 2849
culture collection no.: DSM 6840, CIP 59.31, LMG 2139, NCIB 8959, NCIMB 8959
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
2849 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6840) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6840 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
33394 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/9772 | ||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
116535 | Curators of the CIP | Collection of Institut Pasteur (CIP 59.31) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2059.31 |