Strain identifier

BacDive ID: 13050

Type strain: No

Species: Pseudoalteromonas atlantica

Strain history: CIP <- 1959, NCIB, Pseudomonas atlantica <- W. Yaphe, Canada

NCBI tax ID(s): 288 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 2849

BacDive-ID: 13050

DSM-Number: 6840

keywords: 16S sequence, Bacteria, psychrophilic, Gram-negative, motile, rod-shaped

description: Pseudoalteromonas atlantica DSM 6840 is a psychrophilic, Gram-negative, motile bacterium that was isolated from Unknown source.

NCBI tax id

  • NCBI tax id: 288
  • Matching level: species

strain history

@refhistory
2849<- LMG; LMG 2139 <- CIP; CIP 59.31 <- NCIB (NCIMB); NCIB 8959 (NCIMB 8959) <- W. Yaphe, ARL
116535CIP <- 1959, NCIB, Pseudomonas atlantica <- W. Yaphe, Canada

doi: 10.13145/bacdive13050.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Pseudoalteromonadaceae
  • genus: Pseudoalteromonas
  • species: Pseudoalteromonas atlantica
  • full scientific name: Pseudoalteromonas atlantica (Akagawa-Matsushita et al. 1992) Gauthier et al. 1995
  • synonyms

    • @ref: 20215
    • synonym: Alteromonas atlantica

@ref: 2849

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudoalteromonadaceae

genus: Pseudoalteromonas

species: Pseudoalteromonas atlantica

full scientific name: Pseudoalteromonas atlantica (Akagawa-Matsushita et al. 1992) Gauthier et al. 1995

type strain: no

Morphology

cell morphology

  • @ref: 116535
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2849BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
33394Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
116535CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13
116535CIP Medium 186yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=186

culture temp

@refgrowthtypetemperaturerange
2849positivegrowth20psychrophilic
33394positivegrowth22psychrophilic
116535positivegrowth5-37
116535nogrowth41thermophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11653516947citrate-carbon source
1165354853esculin+hydrolysis
11653517632nitrate-reduction
11653516301nitrite-reduction

antibiotic resistance

  • @ref: 116535
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 116535
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
116535oxidase+
116535beta-galactosidase+3.2.1.23
116535alcohol dehydrogenase-1.1.1.1
116535gelatinase+
116535amylase+
116535DNase+
116535caseinase+3.4.21.50
116535catalase+1.11.1.6
116535tween esterase+
116535lecithinase-
116535lipase+
116535lysine decarboxylase-4.1.1.18
116535ornithine decarboxylase-4.1.1.17
116535urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116535-+++-++-++++++-+----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116535+-++---+-+++-+----+--------------+-------------------------------------------------------+++-++--+-

Isolation, sampling and environmental information

isolation

  • @ref: 116535
  • sample type: Unknown source

taxonmaps

  • @ref: 69479
  • File name: preview.99_1002.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_57;96_122;97_129;98_145;99_1002&stattab=map
  • Last taxonomy: Pseudoalteromonas
  • 16S sequence: KF019206
  • Sequence Identity:
  • Total samples: 3222
  • soil counts: 24
  • aquatic counts: 2792
  • animal counts: 384
  • plant counts: 22

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
28491Risk group (German classification)
1165351Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Pseudoalteromonas atlantica 16S ribosomal RNA gene, partial sequenceKF0192061353ena288
2849Pseudoalteromonas atlantica gene for 16S rRNA, partial sequence, strain: NBRC 103033AB6819131461ena288

External links

@ref: 2849

culture collection no.: DSM 6840, CIP 59.31, LMG 2139, NCIB 8959, NCIMB 8959

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2849Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6840)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6840
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33394Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/9772
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
116535Curators of the CIPCollection of Institut Pasteur (CIP 59.31)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2059.31