Strain identifier
BacDive ID: 130466
Type strain: 
Species: Mycobacterium celeriflavum
Strain Designation: AFPC-000207
Strain history: A. H. Shahraki AFPC-000207.
NCBI tax ID(s): 1249101 (species)
version 9.3 (current version)
General
@ref: 21684
BacDive-ID: 130466
DSM-Number: 46765
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive
description: Mycobacterium celeriflavum AFPC-000207 is a mesophilic, Gram-positive bacterium that was isolated from sputum of a patient suffering from chronic obstructive pulmonary disease .
NCBI tax id
- NCBI tax id: 1249101
- Matching level: species
strain history
| @ref | history |
|---|---|
| 21684 | <- E. Tortoli, Milano,Italy; AFPC000207 <- P. Heidarieh |
| 67770 | A. H. Shahraki AFPC-000207. |
doi: 10.13145/bacdive130466.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium celeriflavum
- full scientific name: Mycobacterium celeriflavum Shahraki et al. 2015
synonyms
- @ref: 20215
- synonym: Mycolicibacterium celeriflavum
@ref: 21684
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium celeriflavum
full scientific name: Mycobacterium celeriflavum Shahraki et al. 2015 emend. Nouioui et al. 2018
strain designation: AFPC-000207
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125439 | positive | 98.1 |
| 125438 | positive | 91.414 |
multimedia
- @ref: 21684
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_46765.jpg
- caption: Medium 645 37°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 21684
- name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
- growth: yes
- link: https://mediadive.dsmz.de/medium/645
- composition: Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 21684 | positive | growth | 37 |
| 67770 | positive | growth | 37 |
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 99.7
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 21684 | sputum of a patient suffering from chronic obstructive pulmonary disease (COPD) | Ahvaz | Iran | IRN | Asia |
| 67770 | Pulmonary specimen of a patient |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Inflammation | |
| #Infection | #Patient | |
| #Host Body Product | #Fluids | #Sputum |
Sequence information
16S sequences
- @ref: 21684
- description: Mycobacterium celeriflavum strain AFPC-000207 16S ribosomal RNA gene, partial sequence
- accession: KJ607136
- length: 1442
- database: nuccore
- NCBI tax ID: 1249101
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycolicibacterium celeriflavum JCM 18439 | GCA_010731795 | complete | ncbi | 1249101 |
| 66792 | Mycobacterium celeriflavum strain DSM 46765 | 1249101.3 | wgs | patric | 1249101 |
| 66792 | Mycolicibacterium celeriflavum strain JCM 18439 | 1249101.10 | complete | patric | 1249101 |
| 67770 | Mycolicibacterium celeriflavum DSM 46765 | GCA_002086175 | contig | ncbi | 1249101 |
| 66792 | Mycolicibacterium celeriflavum DSM 46765 | GCA_025822625 | contig | ncbi | 1249101 |
GC content
- @ref: 67770
- GC-content: 66.9
- method: genome sequence analysis
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 99.7 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 98.1 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 82 | |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 54.8 | |
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 91.414 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.241 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 84.31 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 60.517 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 96.4 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 88.944 | no |
External links
@ref: 21684
culture collection no.: DSM 46765, JCM 18439
straininfo link
- @ref: 88995
- straininfo: 401649
literature
- topic: Phylogeny
- Pubmed-ID: 25389151
- title: Mycobacterium celeriflavum sp. nov., a rapidly growing scotochromogenic bacterium isolated from clinical specimens.
- authors: Shahraki AH, Cavusoglu C, Borroni E, Heidarieh P, Koksalan OK, Cabibbe AM, Hashemzadeh M, Mariottini A, Mostafavi E, Cittaro D, Feizabadi MM, Lazarevic D, Yaghmaei F, Molinari GL, Camaggi A, Tortoli E
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.064832-0
- year: 2014
- mesh: Adult, Aged, Bacterial Typing Techniques, Child, Preschool, DNA, Bacterial/genetics, Female, Genes, Bacterial, Humans, Iran, Male, Microbial Sensitivity Tests, Middle Aged, Molecular Sequence Data, Mycobacterium/*classification/genetics/isolation & purification, Mycobacterium Infections/*microbiology, Mycolic Acids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Turkey
- topic2: Pathogenicity
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21684 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-46765 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46765) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 88995 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401649.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |