Strain identifier

BacDive ID: 130466

Type strain: Yes

Species: Mycobacterium celeriflavum

Strain Designation: AFPC-000207

Strain history: A. H. Shahraki AFPC-000207.

NCBI tax ID(s): 1249101 (species)

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General

@ref: 21684

BacDive-ID: 130466

DSM-Number: 46765

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Mycobacterium celeriflavum AFPC-000207 is a mesophilic bacterium that was isolated from sputum of a patient suffering from chronic obstructive pulmonary disease .

NCBI tax id

  • NCBI tax id: 1249101
  • Matching level: species

strain history

@refhistory
21684<- E. Tortoli, Milano,Italy; AFPC000207 <- P. Heidarieh
67770A. H. Shahraki AFPC-000207.

doi: 10.13145/bacdive130466.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium celeriflavum
  • full scientific name: Mycobacterium celeriflavum Shahraki et al. 2015

  • synonyms

    • @ref: 20215
    • synonym: Mycolicibacterium celeriflavum

@ref: 21684

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium celeriflavum

full scientific name: Mycobacterium celeriflavum Shahraki et al. 2015 emend. Nouioui et al. 2018

strain designation: AFPC-000207

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no94.476
69480100positive

multimedia

  • @ref: 21684
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_46765.jpg
  • caption: Medium 645 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 21684
  • name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/645
  • composition: Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water

culture temp

@refgrowthtypetemperaturerange
21684positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.804

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
21684sputum of a patient suffering from chronic obstructive pulmonary disease (COPD)AhvazIranIRNAsia
67770Pulmonary specimen of a patient

isolation source categories

Cat1Cat2Cat3
#Infection#Inflammation
#Infection#Patient
#Host Body Product#Fluids#Sputum

Sequence information

16S sequences

  • @ref: 21684
  • description: Mycobacterium celeriflavum strain AFPC-000207 16S ribosomal RNA gene, partial sequence
  • accession: KJ607136
  • length: 1442
  • database: ena
  • NCBI tax ID: 1249101

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycolicibacterium celeriflavum JCM 18439GCA_010731795completencbi1249101
66792Mycobacterium celeriflavum strain DSM 467651249101.3wgspatric1249101
66792Mycolicibacterium celeriflavum strain JCM 184391249101.10completepatric1249101
67770Mycolicibacterium celeriflavum DSM 46765GCA_002086175contigncbi1249101
66792Mycolicibacterium celeriflavum DSM 46765GCA_025822625contigncbi1249101

GC content

  • @ref: 67770
  • GC-content: 66.9
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno72no
motileno94.219no
flagellatedno98.276no
gram-positiveyes90.825no
anaerobicno99.31no
aerobicyes90.004no
halophileno89.725no
spore-formingno86.221no
glucose-utilyes82.383no
glucose-fermentno92.333no
thermophileno99.249yes

External links

@ref: 21684

culture collection no.: DSM 46765, JCM 18439

straininfo link

  • @ref: 88995
  • straininfo: 401649

literature

  • topic: Phylogeny
  • Pubmed-ID: 25389151
  • title: Mycobacterium celeriflavum sp. nov., a rapidly growing scotochromogenic bacterium isolated from clinical specimens.
  • authors: Shahraki AH, Cavusoglu C, Borroni E, Heidarieh P, Koksalan OK, Cabibbe AM, Hashemzadeh M, Mariottini A, Mostafavi E, Cittaro D, Feizabadi MM, Lazarevic D, Yaghmaei F, Molinari GL, Camaggi A, Tortoli E
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.064832-0
  • year: 2014
  • mesh: Adult, Aged, Bacterial Typing Techniques, Child, Preschool, DNA, Bacterial/genetics, Female, Genes, Bacterial, Humans, Iran, Male, Microbial Sensitivity Tests, Middle Aged, Molecular Sequence Data, Mycobacterium/*classification/genetics/isolation & purification, Mycobacterium Infections/*microbiology, Mycolic Acids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Turkey
  • topic2: Pathogenicity

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21684Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-46765Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46765)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
88995Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401649.1