Mycobacterium celeriflavum (DSM 46765, JCM 18439, AFPC-000207)

Name: Mycobacterium celeriflavum (DSM 46765, JCM 18439, AFPC-000207)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130466

Type strain

Strain Designation AFPC-000207

Culture col. no. DSM 46765 JCM 18439 AFPC-000207

NCBI tax ID(s) 1249101

Special Collections DSMZ JCM

History <- E. Tortoli, Milano,Italy; AFPC000207 <- P. Heidarieh A. H. Shahraki AFPC-000207.

Links

Mycobacterium celeriflavum AFPC-000207 is a mesophilic prokaryote that was isolated from sputum of a patient suffering from chronic obstructive pulmonary disease .

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 401649

JCM 18439,DSM 46765

@ref 20215

Last LPSN update 2025-12-16 10:01:00

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium celeriflavum

Full scientific name Mycobacterium celeriflavum Shahraki et al. 2015

Synonyms (1)

Mycolicibacterium celeriflavum

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	98.1
125438	positive	91.414

Multimedia

@ref:	21684
multimedia content:	DSM_46765.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_46765.jpg
caption:	Medium 645 37°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21684	MIDDLEBROOK MEDIUM (DSMZ Medium 645)		Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
21684	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Inflammation	-
#Infection	#Patient	-
#Host Body Product	#Fluids	#Sputum

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
21684	sputum of a patient suffering from chronic obstructive pulmonary disease (COPD)	Ahvaz	Iran	IRN	Asia
67770	Pulmonary specimen of a patient

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1073179v1 assembly for Mycolicibacterium celeriflavum JCM 18439	complete	GCA_010731795	1249101.10	8112680517	1249101	97.95
66792	ASM2582262v1 assembly for Mycolicibacterium celeriflavum DSM 46765	contig	GCA_025822625	1249101.12	8115329780	1249101	67.87
67770	ASM208617v1 assembly for Mycolicibacterium celeriflavum DSM 46765	contig	GCA_002086175	1249101.3	8113365519	1249101	53.57

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21684	Mycobacterium celeriflavum strain AFPC-000207 16S ribosomal RNA gene, partial sequence	KJ607136	1442		1249101

GC content

@ref	GC-content (mol%)	Method
67770	66.9	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Mycolicibacterium celeriflavum JCM 18439
NCBI: GCA_010731795

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.70	no
125439	gram_stain	BacteriaNetⓘ	positive	98.10	no
125439	motility	BacteriaNetⓘ	no	82.00	no
125439	spore_formation	BacteriaNetⓘ	yes	54.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycolicibacterium celeriflavum JCM 18439
NCBI: GCA_010731795.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.41	no
125438	anaerobic	anaerobicⓘ	no	97.24	no
125438	aerobic	aerobicⓘ	yes	84.31	no
125438	spore-forming	spore-formingⓘ	no	60.52	no
125438	thermophilic	thermophileⓘ	no	96.40	yes
125438	flagellated	motile2+ⓘ	no	88.94	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera.	Gupta RS, Lo B, Son J.	Front Microbiol	10.3389/fmicb.2018.00067	2018
Phylogeny	Microbiological features and clinical relevance of new species of the genus Mycobacterium.	Tortoli E.	Clin Microbiol Rev	10.1128/cmr.00035-14	2014
Genetics	Characterization of Mycobacterium salfingeri sp. nov.: A novel nontuberculous mycobacteria isolated from a human wound infection.	Musser E, Smith C, Halse TA, Kohlerschmidt D, Rourke A, Fiero A, Musser KA, Escuyer V, Lapierre P.	Front Microbiol	10.3389/fmicb.2022.992610	2022
Phylogeny	Mycobacterium celeriflavum sp. nov., a rapidly growing scotochromogenic bacterium isolated from clinical specimens.	Shahraki AH, Cavusoglu C, Borroni E, Heidarieh P, Koksalan OK, Cabibbe AM, Hashemzadeh M, Mariottini A, Mostafavi E, Cittaro D, Feizabadi MM, Lazarevic D, Yaghmaei F, Molinari GL, Camaggi A, Tortoli E	Int J Syst Evol Microbiol	10.1099/ijs.0.064832-0	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21684	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46765
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycobacterium celeriflavum (DSM 46765, JCM 18439, AFPC-000207)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_010731795

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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