Strain identifier

BacDive ID: 130455

Type strain: No

Species: Acinetobacter bohemicus

Strain history: I. Ahmed NCCP-644.

NCBI tax ID(s): 1435036 (species)

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General

@ref: 21456

BacDive-ID: 130455

DSM-Number: 100419

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative

description: Acinetobacter bohemicus DSM 100419 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from textile dyeing wastewater treatment pond.

NCBI tax id

  • NCBI tax id: 1435036
  • Matching level: species

strain history

@refhistory
21456<- KCTC <- I. Ahmed; NCCP-644
67770I. Ahmed NCCP-644.

doi: 10.13145/bacdive130455.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter bohemicus
  • full scientific name: Acinetobacter bohemicus Krizova et al. 2015

  • synonyms

    • @ref: 20215
    • synonym: Acinetobacter pakistanensis

@ref: 21456

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter bohemicus

full scientific name: Acinetobacter bohemicus Krizova et al. 2015

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.846

colony morphology

  • @ref: 21456
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21456NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
21456TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
63657positivegrowth30mesophilic
21456positivegrowth25mesophilic
67770positivegrowth25mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 63657
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.998

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
21456catalase+1.11.1.6
21456cytochrome-c oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
21456---------------+-+--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
21456textile dyeing wastewater treatment pondKohinoor Mills, IslamabadPakistanPAKAsia
63657Textile dyeing wastewater treatment pondIslamabad,Kohinoor MillsPakistanPAKAsia
67770Textile dyeing wastewater from a treatment pond at Kohinoor millsIslamabadPakistanPAKAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Waste#Wastewater
#Environmental#Aquatic#Pond (small)

Safety information

risk assessment

  • @ref: 21456
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21456
  • description: Acinetobacter pakistanensis gene for 16S ribosomal RNA, partial sequence
  • accession: AB916465
  • length: 1413
  • database: ena
  • NCBI tax ID: 1435036

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acinetobacter bohemicus CCUG 69707GCA_008802275contigncbi1435036
66792Acinetobacter bohemicus strain CCUG 697071435036.7wgspatric1435036
67770Acinetobacter bohemicus ANC 5076GCA_900116265scaffoldncbi1435036

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno91.02no
gram-positiveno97.838no
anaerobicno98.161yes
halophileno93.024no
spore-formingno96.819no
thermophileno99.848yes
glucose-utilno86.998no
aerobicyes89.908yes
flagellatedno94.757no
glucose-fermentno91.827yes

External links

@ref: 21456

culture collection no.: DSM 100419, JCM 18977, KCTC 42081, LMG 28467, NCCP 644, CCUG 69707

straininfo link

@refstraininfo
88983399090
88984411566

literature

  • topic: Phylogeny
  • Pubmed-ID: 27692032
  • title: Acinetobacter pakistanensis Abbas et al. 2014 is a later heterotypic synonym of Acinetobacter bohemicus Krizova et al. 2014.
  • authors: Nemec A, Radolfova-Krizova L
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001530
  • year: 2016
  • mesh: Acinetobacter/*classification, Bacterial Typing Techniques, DNA, Bacterial/genetics, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21456Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100419Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100419)
63657Curators of the CCUGhttps://www.ccug.se/strain?id=69707Culture Collection University of Gothenburg (CCUG) (CCUG 69707)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
88983Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399090.1
88984Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID411566.1