Strain identifier
BacDive ID: 130452
Type strain: 
Species: Acinetobacter gandensis
Strain Designation: UG 60467
Strain history: <- M. Vaneechoutte, Ghent Univ., Belgium; UG 60467 <- A. Smet, Fac. Vet. Med
NCBI tax ID(s): 1443941 (species)
version 8.1 (current version)
General
@ref: 21453
BacDive-ID: 130452
DSM-Number: 28097
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative
description: Acinetobacter gandensis UG 60467 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from dung of a hospitalized horse, with an illness not associated with the isolate.
NCBI tax id
- NCBI tax id: 1443941
- Matching level: species
strain history
- @ref: 21453
- history: <- M. Vaneechoutte, Ghent Univ., Belgium; UG 60467 <- A. Smet, Fac. Vet. Med
doi: 10.13145/bacdive130452.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Acinetobacter
- species: Acinetobacter gandensis
- full scientific name: Acinetobacter gandensis Smet et al. 2014
@ref: 21453
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Acinetobacter
species: Acinetobacter gandensis
full scientific name: Acinetobacter gandensis Smet et al. 2014
strain designation: UG 60467
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.969
colony morphology
- @ref: 21453
- type of hemolysis: gamma
- incubation period: 1-2 days
Culture and growth conditions
culture medium
- @ref: 21453
- name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
- growth: yes
- link: https://mediadive.dsmz.de/medium/693
- composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 63490 | positive | growth | 30 | mesophilic |
| 21453 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 63490
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.984 |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | + | assimilation |
| 68369 | 24265 | gluconate | - | assimilation |
| 68369 | 17306 | maltose | - | assimilation |
| 68369 | 59640 | N-acetylglucosamine | - | assimilation |
| 68369 | 16899 | D-mannitol | - | assimilation |
| 68369 | 16024 | D-mannose | - | assimilation |
| 68369 | 30849 | L-arabinose | - | assimilation |
| 68369 | 17634 | D-glucose | - | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | - | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 21453 | catalase | + | 1.11.1.6 |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | - | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21453 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | + | - | - |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | sampling date |
|---|---|---|---|---|---|---|
| 21453 | dung of a hospitalized horse, with an illness not associated with the isolate | Merelbeke, Gent | Belgium | BEL | Europe | |
| 63490 | Horse,faeces | Merelbeke | Belgium | BEL | Europe | 2012 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Medical environment | #Clinic |
| #Host | #Mammals | #Equidae (Horse) |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_2015.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_8;96_11;97_131;98_1328;99_2015&stattab=map
- Last taxonomy: Acinetobacter gandensis subclade
- 16S sequence: KM206131
- Sequence Identity:
- Total samples: 1051
- soil counts: 90
- aquatic counts: 361
- animal counts: 559
- plant counts: 41
Sequence information
16S sequences
- @ref: 21453
- description: Acinetobacter gandensis strain UG 60467 16S ribosomal RNA gene, partial sequence
- accession: KM206131
- length: 1404
- database: ena
- NCBI tax ID: 1443941
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acinetobacter gandensis CCUG 68482 | GCA_008802205 | contig | ncbi | 1443941 |
| 66792 | Acinetobacter gandensis strain CCUG 68482 | 1443941.6 | wgs | patric | 1443941 |
GC content
- @ref: 21453
- GC-content: 39.6
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 90.717 | no |
| gram-positive | no | 97.951 | no |
| anaerobic | no | 98.82 | no |
| halophile | no | 88.588 | no |
| spore-forming | no | 96.631 | no |
| thermophile | no | 99.901 | yes |
| glucose-util | no | 87.137 | yes |
| aerobic | yes | 93.788 | no |
| flagellated | no | 94.267 | no |
| glucose-ferment | no | 91.291 | yes |
External links
@ref: 21453
culture collection no.: CCUG 68482, DSM 28097, ANC 4275, LMG 27960
straininfo link
- @ref: 88980
- straininfo: 391386
literature
- topic: Phylogeny
- Pubmed-ID: 25225259
- title: Acinetobacter gandensis sp. nov. isolated from horse and cattle.
- authors: Smet A, Cools P, Krizova L, Maixnerova M, Sedo O, Haesebrouck F, Kempf M, Nemec A, Vaneechoutte M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.068791-0
- year: 2014
- mesh: Acinetobacter/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, Belgium, Cattle/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/microbiology, Genes, Bacterial, Horses/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21453 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28097 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28097) | |
| 63490 | Curators of the CCUG | https://www.ccug.se/strain?id=68482 | Culture Collection University of Gothenburg (CCUG) (CCUG 68482) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68369 | Automatically annotated from API 20NE | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 88980 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID391386.1 |