Strain identifier
BacDive ID: 130407
Type strain: 
Species: Frigoribacterium endophyticum
Strain history: <- Wenjun Li, EGI 6500707
NCBI tax ID(s): 1522176 (species)
version 8.1 (current version)
General
@ref: 21594
BacDive-ID: 130407
DSM-Number: 28751
keywords: 16S sequence, Bacteria, aerobe, mesophilic
description: Frigoribacterium endophyticum DSM 28751 is an aerobe, mesophilic bacterium that was isolated from surface-sterilized root of a healthy halophyte Anabasis elatior Schischk.
NCBI tax id
- NCBI tax id: 1522176
- Matching level: species
strain history
| @ref | history |
|---|---|
| 21594 | <- W.-J. Li, YIM; EGI 6500707 <- H. Wang, Xinjiang Inst. of Ecol. and Geography (XIEG), Chin. Acad. of Scs., Urumchi, China |
| 67770 | W.-J. Li EGI 6500707. |
| 67771 | <- Wenjun Li, EGI 6500707 |
doi: 10.13145/bacdive130407.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Frigoribacterium
- species: Frigoribacterium endophyticum
- full scientific name: Frigoribacterium endophyticum Wang et al. 2015
@ref: 21594
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Frigoribacterium
species: Frigoribacterium endophyticum
full scientific name: Frigoribacterium endophyticum Wang et al. 2015
type strain: yes
Culture and growth conditions
culture medium
- @ref: 21594
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 21594 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
| 67771 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
observation
- @ref: 67770
- observation: quinones: MK-9
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 21594 | surface-sterilized root of a healthy halophyte Anabasis elatior (C. A. Mey.) Schischk | Anabasis elatior | Xinjiang province, city of Urumqi | China | CHN | Asia |
| 67770 | Root of Anabasis elatior (C. A. Mey.) Schischk | Anabasis elatior | Urumqi, Xinjiang Province, north-west China | China | CHN | Asia |
| 67771 | Plant | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host | #Plants | #Shrub (Scrub) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
| #Host Body-Site | #Plant | #Sterilized plant part |
taxonmaps
- @ref: 69479
- File name: preview.99_187.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_133;97_144;98_161;99_187&stattab=map
- Last taxonomy: Microbacteriaceae
- 16S sequence: KM114212
- Sequence Identity:
- Total samples: 14126
- soil counts: 4109
- aquatic counts: 1587
- animal counts: 4245
- plant counts: 4185
Safety information
risk assessment
- @ref: 21594
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21594
- description: Frigoribacterium endophyticum strain EGI 6500707 16S ribosomal RNA gene, partial sequence
- accession: KM114212
- length: 1523
- database: ena
- NCBI tax ID: 1522176
GC content
- @ref: 21594
- GC-content: 69.1
- method: high performance liquid chromatography (HPLC)
External links
@ref: 21594
culture collection no.: DSM 28751, JCM 30093, KCTC 29493, EGI 6500707
straininfo link
- @ref: 88939
- straininfo: 397629
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25609679 | Frigoribacterium endophyticum sp. nov., an endophytic actinobacterium isolated from the root of Anabasis elatior (C. A. Mey.) Schischk. | Wang HF, Zhang YG, Chen JY, Guo JW, Li L, Hozzein WN, Zhang YM, Wadaan MAM, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.000081 | 2015 | Actinomycetales/*classification/genetics/isolation & purification, Amaranthaceae/*microbiology, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 26296577 | Lysinibacter cavernae gen. nov., sp. nov., a new member of the family Microbacteriaceae isolated from a karst cave. | Tuo L, Guo L, Liu SW, Liu JM, Zhang YQ, Jiang ZK, Liu XF, Chen L, Zu J, Sun CH | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000415 | 2015 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Caves/*microbiology, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Molecular Sequence Data, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/chemistry | Genetics |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21594 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28751 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28751) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88939 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397629.1 |