Name: Frigoribacterium endophyticum DSM 28751
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130407

Type strain:

Species: Frigoribacterium endophyticum

Culture col. no.: DSM 28751, JCM 30093, KCTC 29493, EGI 6500707

Strain history: <- Wenjun Li, EGI 6500707

NCBI tax ID(s): 1522176 (species)

SI-ID 397629

DSM 28751

Special Collections

Section

When using BacDive for research please cite our paper

Frigoribacterium endophyticum DSM 28751 is an aerobe, mesophilic bacterium that was isolated from surface-sterilized root of a healthy halophyte Anabasis elatior Schischk.

aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Frigoribacterium*
	Species	**Frigoribacterium endophyticum**
	Full Scientific Name (LPSN)	Frigoribacterium endophyticum Wang et al. 2015

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21594]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #21594]

Culture medium growth

[Ref.: #21594]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21594]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21594]	growth	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #67770]

Observation

quinones: MK-9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21594]	Sample type/isolated from	surface-sterilized root of a healthy halophyte Anabasis elatior (C. A. Mey.) Schischk
[Ref.: #21594]	Host species	Anabasis elatior
[Ref.: #21594]	Geographic location (country and/or sea, region)	Xinjiang province, city of Urumqi
[Ref.: #21594]	Country	China
[Ref.: #21594]	Country ISO 3 Code	CHN
[Ref.: #21594]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Root of Anabasis elatior (C. A. Mey.) Schischk
[Ref.: #67770]	Host species	Anabasis elatior
[Ref.: #67770]	Geographic location (country and/or sea, region)	Urumqi, Xinjiang Province, north-west China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	Plant
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Root (Rhizome)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KM114212 (>99% sequence identity) for Microbacteriaceae from Microbeatlas

Aquatic Samples	1587
Soil Samples	4109
Animal Samples	4245
Plant Samples	4185
Total Samples	14126

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21594]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21594]	Frigoribacterium endophyticum strain EGI 6500707 16S ribosomal RNA gene, partial sequence	KM114212	1523	GenBank ENA	1522176 tax ID

[Ref.: #21594]

GC-content

69.1 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #21594]

Culture collection no.

DSM 28751, JCM 30093, KCTC 29493, EGI 6500707

[Ref.: #88939]

SI-ID 397629

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lysinibacter cavernae gen. nov., sp. nov., a new member of the family Microbacteriaceae isolated from a karst cave.	Tuo L, Guo L, Liu SW, Liu JM, Zhang YQ, Jiang ZK, Liu XF, Chen L, Zu J, Sun CH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000415	2015	*
Phylogeny	Frigoribacterium endophyticum sp. nov., an endophytic actinobacterium isolated from the root of Anabasis elatior (C. A. Mey.) Schischk.	Wang HF, Zhang YG, Chen JY, Guo JW, Li L, Hozzein WN, Zhang YM, Wadaan MAM, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.000081	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21594

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28751

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88939

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397629.1 )

* These data were automatically processed and therefore are not curated

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