Frigoribacterium endophyticum (DSM 28751, JCM 30093, KCTC 29493)

Name: Frigoribacterium endophyticum (DSM 28751, JCM 30093, KCTC 29493)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130407

Type strain

Culture col. no. DSM 28751 JCM 30093 KCTC 29493 EGI 6500707

NCBI tax ID(s) 1522176

Special Collections DSMZ JCM KCTC

Links

Frigoribacterium endophyticum DSM 28751 is an aerobe, mesophilic prokaryote that was isolated from surface-sterilized root of a healthy halophyte Anabasis elatior Schischk.

aerobe mesophilic 16S sequence

Name and taxonomic classification

SI-ID 397629

KCTC 29493,JCM 30093,DSM 28751

@ref 20215

Last LPSN update 2025-12-16 10:00:59

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Frigoribacterium

Species Frigoribacterium endophyticum

Full scientific name Frigoribacterium endophyticum Wang et al. 2015

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21594	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
21594	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic
67771	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

67771

Oxygen toleranceaerobe

Observation

67770

Observationquinones: MK-9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Root (Rhizome)
#Host Body-Site	#Plant	#Sterilized plant part

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
21594	surface-sterilized root of a healthy halophyte Anabasis elatior (C. A. Mey.) Schischk	Anabasis elatior	Xinjiang province, city of Urumqi	China	CHN	Asia
67770	Root of Anabasis elatior (C. A. Mey.) Schischk	Anabasis elatior	Urumqi, Xinjiang Province, north-west China	China	CHN	Asia
67771	Plant			China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KM114212 (>99% sequence identity) for Microbacteriaceae from Microbeatlas

Aquatic Samples	1587
Soil Samples	4109
Animal Samples	4245
Plant Samples	4185
Total Samples	14126

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21594	1	Risk group (German classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21594	Frigoribacterium endophyticum strain EGI 6500707 16S ribosomal RNA gene, partial sequence	KM114212	1523		1522176

GC content

@ref	GC-content (mol%)	Method
21594	69.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lysinibacter cavernae gen. nov., sp. nov., a new member of the family Microbacteriaceae isolated from a karst cave.	Tuo L, Guo L, Liu SW, Liu JM, Zhang YQ, Jiang ZK, Liu XF, Chen L, Zu J, Sun CH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000415	2015
Phylogeny	Frigoribacterium endophyticum sp. nov., an endophytic actinobacterium isolated from the root of Anabasis elatior (C. A. Mey.) Schischk.	Wang HF, Zhang YG, Chen JY, Guo JW, Li L, Hozzein WN, Zhang YM, Wadaan MAM, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.000081	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21594	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28751
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Frigoribacterium endophyticum (DSM 28751, JCM 30093, KCTC 29493)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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