Strain identifier
BacDive ID: 130404
Type strain: 
Species: Curtobacterium flaccumfaciens
Strain Designation: UCD-AKU
Strain history: <- D. A. Coil, Univ. of California, USA; UCD-AKU <- H. Holland-Moritz
NCBI tax ID(s): 2035 (species)
version 9.1 (current version)
General
@ref: 21556
BacDive-ID: 130404
DSM-Number: 29247
keywords: genome sequence, Bacteria, Gram-positive, plant pathogen
description: Curtobacterium flaccumfaciens UCD-AKU is a Gram-positive plant pathogen that was isolated from residential carpet.
NCBI tax id
- NCBI tax id: 2035
- Matching level: species
strain history
- @ref: 21556
- history: <- D. A. Coil, Univ. of California, USA; UCD-AKU <- H. Holland-Moritz
doi: 10.13145/bacdive130404.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Curtobacterium
- species: Curtobacterium flaccumfaciens
- full scientific name: Curtobacterium flaccumfaciens (Hedges 1922) Collins and Jones 1984
synonyms
@ref synonym 20215 Corynebacterium flaccumfaciens 20215 Bacterium flaccumfaciens 20215 Phytomonas poinsettiae 20215 Corynebacterium betae 20215 Corynebacterium poinsettiae 20215 Corynebacterium flaccumfaciens subsp. poinsettiae 20215 Corynebacterium oortii 20215 Corynebacterium flaccumfaciens subsp. oortii 20215 Corynebacterium flaccumfaciens subsp. betae
@ref: 21556
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Curtobacterium
species: Curtobacterium flaccumfaciens
full scientific name: Curtobacterium flaccumfaciens (Hedges 1922) Collins and Jones 1984
strain designation: UCD-AKU
type strain: no
Culture and growth conditions
culture medium
- @ref: 21556
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 21556
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 21556
- sample type: residential carpet
- geographic location: Davis
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Engineered
- Cat2: #Industrial
- Cat3: #Engineered product
Safety information
risk assessment
- @ref: 21556
- pathogenicity plant: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Curtobacterium flaccumfaciens UCD-AKU | GCA_000349565 | scaffold | ncbi | 1292022 |
| 66792 | Curtobacterium flaccumfaciens UCD-AKU | 1292022.3 | wgs | patric | 1292022 |
| 66792 | Curtobacterium flaccumfaciens UCD-AKU | 2547132189 | draft | img | 1292022 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 86.686 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.907 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 80.898 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 73.11 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 96.433 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 78 | no |
External links
@ref: 21556
culture collection no.: DSM 29247
straininfo link
- @ref: 88936
- straininfo: 404453
literature
- topic: Genetics
- Pubmed-ID: 23682147
- title: Draft Genome Sequence of Curtobacterium flaccumfaciens Strain UCD-AKU (Phylum Actinobacteria).
- authors: Flanagan JC, Lang JM, Darling AE, Eisen JA, Coil DA
- journal: Genome Announc
- DOI: 10.1128/genomeA.00244-13
- year: 2013
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21556 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29247 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29247) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 88936 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404453.1 |