Strain identifier
BacDive ID: 130291
Type strain: 
Species: Citrobacter freundii
Strain history: <- O. Savelieva, Department of Microbiology, Moscow State University
NCBI tax ID(s): 546 (species)
version 8.1 (current version)
General
@ref: 21548
BacDive-ID: 130291
DSM-Number: 14984
keywords: 16S sequence, Bacteria, mesophilic
description: Citrobacter freundii DSM 14984 is a mesophilic bacterium that was isolated from methanogenic sludge of lab-scale bed reactor treating manure waste water.
NCBI tax id
- NCBI tax id: 546
- Matching level: species
strain history
- @ref: 21548
- history: <- O. Savelieva, Department of Microbiology, Moscow State University
doi: 10.13145/bacdive130291.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Citrobacter
- species: Citrobacter freundii
- full scientific name: Citrobacter freundii (Braak 1928) Werkman and Gillen 1932 (Approved Lists 1980)
synonyms
@ref synonym 20215 Bethesda ballerupensis 20215 Bacterium freundii
@ref: 21548
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Citrobacter
species: Citrobacter freundii
full scientific name: Citrobacter freundii (Braak 1928) Werkman and Gillen 1932
type strain: no
Culture and growth conditions
culture medium
- @ref: 21548
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
- @ref: 21548
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 21548
- sample type: methanogenic sludge of lab-scale bed reactor treating manure waste water
- country: Russia
- origin.country: RUS
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Bioreactor | |
| #Environmental | #Terrestrial | #Mud (Sludge) |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Condition | #Anoxic (anaerobic) |
taxonmaps
- @ref: 69479
- File name: preview.99_644.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_17;99_644&stattab=map
- Last taxonomy: Citrobacter
- 16S sequence: AY259630
- Sequence Identity:
- Total samples: 66090
- soil counts: 3252
- aquatic counts: 7413
- animal counts: 52478
- plant counts: 2947
Safety information
risk assessment
- @ref: 21548
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21548
- description: Citrobacter freundii strain WA1 16S ribosomal RNA gene, partial sequence
- accession: AY259630
- length: 1446
- database: ena
- NCBI tax ID: 546
External links
@ref: 21548
culture collection no.: DSM 14984, WA 1
straininfo link
- @ref: 88826
- straininfo: 404811
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 14716473 | Utilization of aminoaromatic acids by a methanogenic enrichment culture and by a novel Citrobacter freundii strain. | Savelieva O, Kotova I, Roelofsen W, Stams AJ, Netrusov A | Arch Microbiol | 10.1007/s00203-003-0645-1 | 2004 | Ammonia/metabolism, Anaerobiosis, Benzaldehydes/metabolism, Benzyl Alcohol/metabolism, Biodegradation, Environmental, Bioreactors, Carbon Dioxide/metabolism, Carboxylic Acids/metabolism, Citrobacter freundii/classification/cytology/*isolation & purification/*metabolism, DNA, Ribosomal/chemistry/isolation & purification, Glucose/metabolism, Hydrocarbons, Aromatic/*metabolism, Hydrogen/metabolism, Kinetics, Mesalamine/metabolism, Methane/metabolism, Molecular Sequence Data, Serine/metabolism, Sewage/microbiology | Enzymology |
| Cultivation | 18401122 | Resuscitation of eleven-year VBNC Citrobacter. | Dhiaf A, Bakhrouf A, Witzel KP | J Water Health | 10.2166/wh.2008.131 | 2008 | Citrobacter/*growth & development/*physiology, Culture Media, Genes, rRNA, Polymerase Chain Reaction, RNA, Bacterial/analysis, Seawater/*microbiology, Time Factors |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21548 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14984 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14984) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88826 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404811.1 |