Strain identifier
BacDive ID: 130287
Type strain: 
Species: Desulfuromonas carbonis
Strain Designation: ICBM
Strain history: T. T. An and F. W. Picardal; Indiana Univ., USA; ICBM.
NCBI tax ID(s): 1523623 (species)
version 9 (current version)
General
@ref: 21890
BacDive-ID: 130287
DSM-Number: 29759
keywords: 16S sequence, Bacteria, anaerobe
description: Desulfuromonas carbonis ICBM is an anaerobe bacterium that was isolated from water extracted from an active coalbed methane gas well.
NCBI tax id
- NCBI tax id: 1523623
- Matching level: species
strain history
| @ref | history |
|---|---|
| 21890 | <- T. T. An, Indiana University, Bloomington, USA; ICBM <- T. T. An {2014} |
| 67770 | T. T. An and F. W. Picardal; Indiana Univ., USA; ICBM. |
doi: 10.13145/bacdive130287.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfuromonadales
- family: Desulfuromonadaceae
- genus: Desulfuromonas
- species: Desulfuromonas carbonis
- full scientific name: Desulfuromonas carbonis An and Picardal 2015
@ref: 21890
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfuromonadales
family: Desulfuromonadaceae
genus: Desulfuromonas
species: Desulfuromonas carbonis
full scientific name: Desulfuromonas carbonis An and Picardal 2015
strain designation: ICBM
type strain: yes
Morphology
colony morphology
- @ref: 21890
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 21890
- name: DESULFUROMONAS CARBONIS MEDIUM (DSMZ Medium 1584)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1584
- composition: Name: DESULFUROMONAS CARBONIS MEDIUM (DSMZ Medium 1584) Composition: NaCl 8.66995 g/l Na2-fumarate 7.88177 g/l MgCl2 x 6 H2O 4.76847 g/l Na2CO3 1.47783 g/l KCl 0.334975 g/l NH4Cl 0.246305 g/l K2HPO4 0.147783 g/l CaCl2 x 2 H2O 0.147783 g/l Fe(NH4)2(SO4)2 0.00295567 g/l HCl 0.00246305 g/l FeCl2 x 4 H2O 0.00147783 g/l NaOH 0.000492611 g/l CoCl2 x 6 H2O 0.000187192 g/l MnCl2 x 4 H2O 9.85222e-05 g/l Pyridoxine hydrochloride 9.85222e-05 g/l ZnCl2 6.89655e-05 g/l p-Aminobenzoic acid 4.92611e-05 g/l Calcium D-(+)-pantothenate 4.92611e-05 g/l (DL)-alpha-Lipoic acid 4.92611e-05 g/l Nicotinic acid 4.92611e-05 g/l Riboflavin 4.92611e-05 g/l Thiamine HCl 4.92611e-05 g/l Na2MoO4 x 2 H2O 3.5468e-05 g/l NiCl2 x 6 H2O 2.36453e-05 g/l Folic acid 1.97044e-05 g/l Biotin 1.97044e-05 g/l H3BO3 5.91133e-06 g/l Na2WO4 x 2 H2O 3.94089e-06 g/l Na2SeO3 x 5 H2O 2.95566e-06 g/l CuCl2 x 2 H2O 1.97044e-06 g/l Vitamin B12 9.85222e-07 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 21890 | positive | growth | 30 |
| 67770 | positive | growth | 30 |
Physiology and metabolism
oxygen tolerance
- @ref: 21890
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 21890 | water extracted from an active coalbed methane gas well | Indiana, Sullivan County, New Lebanon | USA | USA | North America | 39.024 | -87.447 |
| 67770 | Active coalbed methane gas well | IN | USA | USA | North America |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
taxonmaps
- @ref: 69479
- File name: preview.99_150.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_50;96_111;97_118;98_131;99_150&stattab=map
- Last taxonomy: Desulfuromonas carbonis subclade
- 16S sequence: KJ776405
- Sequence Identity:
- Total samples: 496
- soil counts: 104
- aquatic counts: 367
- animal counts: 13
- plant counts: 12
Safety information
risk assessment
- @ref: 21890
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21890
- description: Desulfuromonas carbonis strain ICBM 16S ribosomal RNA gene, partial sequence
- accession: KJ776405
- length: 1547
- database: nuccore
- NCBI tax ID: 1523623
GC content
- @ref: 21890
- GC-content: 61.2
- method: high performance liquid chromatography (HPLC)
External links
@ref: 21890
culture collection no.: DSM 29759, JCM 30471
straininfo link
- @ref: 88822
- straininfo: 399672
literature
- topic: Phylogeny
- Pubmed-ID: 25736408
- title: Desulfuromonas carbonis sp. nov., an Fe(III)-, S0- and Mn(IV)-reducing bacterium isolated from an active coalbed methane gas well.
- authors: An TT, Picardal FW
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000159
- year: 2015
- mesh: Bacterial Typing Techniques, Base Composition, Cytochromes/chemistry, DNA, Bacterial/genetics, Desulfuromonas/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Ferric Compounds/metabolism, Indiana, Manganese Compounds/metabolism, Methane, Molecular Sequence Data, Oil and Gas Fields/*microbiology, Oxidation-Reduction, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Metabolism
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21890 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29759 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29759) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88822 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399672.1 |