Strain identifier

BacDive ID: 130282

Type strain: Yes

Species: Desulfatiglans parachlorophenolica

Strain Designation: DS

Strain history: A. Katayama and D. Suzuki; Nagoya Univ., Japan; DS.

NCBI tax ID(s): 1261393 (species)

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General

@ref: 22128

BacDive-ID: 130282

DSM-Number: 27197

keywords: 16S sequence, Bacteria, anaerobe

description: Desulfatiglans parachlorophenolica DS is an anaerobe bacterium that was isolated from river sediment contaminated with volatile organic carbons.

NCBI tax id

  • NCBI tax id: 1261393
  • Matching level: species

strain history

@refhistory
22128<- A. Katayama, Nagoya Univ., EcoTopia Science Inst., Japan; strain DS <- D. Suzuki {2011}
67770A. Katayama and D. Suzuki; Nagoya Univ., Japan; DS.

doi: 10.13145/bacdive130282.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfobacterales
  • family: Desulfobacteraceae
  • genus: Desulfatiglans
  • species: Desulfatiglans parachlorophenolica
  • full scientific name: Desulfatiglans parachlorophenolica Suzuki et al. 2014

@ref: 22128

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfobacterales

family: Desulfobacteraceae

genus: Desulfatiglans

species: Desulfatiglans parachlorophenolica

full scientific name: Desulfatiglans parachlorophenolica Suzuki et al. 2014

strain designation: DS

type strain: yes

Morphology

colony morphology

  • @ref: 22128
  • incubation period: 8-14 days

Culture and growth conditions

culture medium

  • @ref: 22128
  • name: DESULFOBACTER MEDIUM (DSMZ Medium 193)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/193
  • composition: Name: DESULFOBACTER MEDIUM (DSMZ Medium 193; with strain-specific modifications) Composition: NaCl 6.97906 g/l Na2SO4 2.99102 g/l Na2CO3 1.49551 g/l MgCl2 x 6 H2O 1.29611 g/l Na-benzoate 0.598205 g/l KCl 0.498505 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299102 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149552 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498505 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

culture temp

@refgrowthtypetemperature
22128positivegrowth30
67770positivegrowth30

Physiology and metabolism

oxygen tolerance

  • @ref: 22128
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
22128river sediment contaminated with volatile organic carbonsAichi Prefecture, Nagoya, Arako RiverJapanJPNAsia
67770River sediment contaminated with volatile organic compounds in Japan

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Environmental#Aquatic#River (Creek)
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_80144.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_433;96_2684;97_3296;98_4148;99_80144&stattab=map
  • Last taxonomy: Desulfatiglans parachlorophenolica
  • 16S sequence: AB763347
  • Sequence Identity:
  • Total samples: 16
  • soil counts: 2
  • aquatic counts: 13
  • animal counts: 1

Safety information

risk assessment

  • @ref: 22128
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22128
  • description: Desulfatiglans parachlorophenolica gene for 16S ribosomal RNA, partial sequence
  • accession: AB763347
  • length: 1493
  • database: nuccore
  • NCBI tax ID: 1261393

GC content

  • @ref: 22128
  • GC-content: 58.9
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 22128

culture collection no.: DSM 27197, JCM 19179

straininfo link

  • @ref: 88817
  • straininfo: 402381

literature

  • topic: Phylogeny
  • Pubmed-ID: 24944334
  • title: Reclassification of Desulfobacterium anilini as Desulfatiglans anilini comb. nov. within Desulfatiglans gen. nov., and description of a 4-chlorophenol-degrading sulfate-reducing bacterium, Desulfatiglans parachlorophenolica sp. nov.
  • authors: Suzuki D, Li Z, Cui X, Zhang C, Katayama A
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.064360-0
  • year: 2014
  • mesh: Bacterial Typing Techniques, Base Composition, Chlorophenols/*metabolism, DNA, Bacterial/genetics, Deltaproteobacteria/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidation-Reduction, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers/microbiology, Sequence Analysis, DNA, Sulfur-Reducing Bacteria/*classification/genetics/isolation & purification, Water Pollutants, Chemical/metabolism
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22128Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27197Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27197)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88817Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402381.1