Strain identifier
BacDive ID: 130249
Type strain: 
Species: Clostridium swellfunianum
Strain Designation: S11-3-10
Strain history: W.-X. Zhang S11-3-10.
NCBI tax ID(s): 1367462 (species)
version 8.1 (current version)
General
@ref: 21883
BacDive-ID: 130249
DSM-Number: 27788
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Clostridium swellfunianum S11-3-10 is an anaerobe, mesophilic bacterium that was isolated from pit mud of the Chinese Luzhou-flavor liquor manufacturer.
NCBI tax id
- NCBI tax id: 1367462
- Matching level: species
strain history
| @ref | history |
|---|---|
| 21883 | <- Y. Ge, China Natl. Res. Inst. of Food and Fermentation Ind., Beijing, China; S11-3-10 <- W. Zhang, Sichuan Univ., College of Light Ind., Textile and Food Eng., Chengdu, China {2012} |
| 67770 | W.-X. Zhang S11-3-10. |
doi: 10.13145/bacdive130249.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium swellfunianum
- full scientific name: Clostridium swellfunianum Liu et al. 2015
@ref: 21883
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium swellfunianum
full scientific name: Clostridium swellfunianum Liu et al. 2015
strain designation: S11-3-10
type strain: yes
Culture and growth conditions
culture medium
- @ref: 21883
- name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)
- growth: yes
- link: https://mediadive.dsmz.de/medium/110
- composition: Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 21883 | positive | growth | 35 | mesophilic |
| 67770 | positive | growth | 35 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 21883
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 21883 | pit mud of the Chinese Luzhou-flavor liquor manufacturer | Luzhou-flavor | Sichuan province, Chengdu city, Swellfun Co. Ltd | China | CHN | Asia |
| 67770 | Pit mud of the Luzhou-flavor liquor manufacturer | Luzhou-flavor | Swellfun Co., Ltd., Sichuan Province | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Fermented |
| #Environmental | #Terrestrial | #Mud (Sludge) |
| #Engineered | #Food production | #Beverage |
taxonmaps
- @ref: 69479
- File name: preview.99_141321.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_3260;97_3999;98_7859;99_141321&stattab=map
- Last taxonomy: Clostridium swellfunianum subclade
- 16S sequence: AB838978
- Sequence Identity:
- Total samples: 241
- soil counts: 138
- aquatic counts: 62
- animal counts: 36
- plant counts: 5
Safety information
risk assessment
- @ref: 21883
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21883
- description: Clostridium swellfunianum gene for 16S ribosomal RNA, partial sequence
- accession: AB838978
- length: 1466
- database: ena
- NCBI tax ID: 1367462
Genome sequences
- @ref: 66792
- description: Clostridium swellfunianum CICC 10730
- accession: GCA_023656515
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1367462
GC content
- @ref: 21883
- GC-content: 36.4
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | yes | 57.811 | no |
| gram-positive | yes | 75.109 | no |
| anaerobic | yes | 95.708 | yes |
| aerobic | no | 96.783 | no |
| halophile | no | 92.355 | no |
| spore-forming | yes | 91.641 | no |
| motile | yes | 85.211 | no |
| glucose-ferment | yes | 65.365 | no |
| thermophile | no | 96.216 | yes |
| glucose-util | yes | 93.525 | no |
External links
@ref: 21883
culture collection no.: DSM 27788, CICC 10730, JCM 19606
straininfo link
- @ref: 88788
- straininfo: 398315
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25103947 | Clostridium swellfunianum sp. nov., a novel anaerobic bacterium isolated from the pit mud of Chinese Luzhou-flavor liquor production. | Liu C, Huang D, Liu L, Zhang J, Deng Y, Chen L, Zhang W, Wu Z, Fan A, Lai D, Dai L | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0251-z | 2014 | Anaerobiosis, Bacterial Typing Techniques, Base Composition, Carbohydrate Metabolism, Carbohydrates/analysis, Cell Wall/chemistry, China, Clostridium/*classification/genetics/*isolation & purification/physiology, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Ethanol/metabolism, Fatty Acids/analysis, *Food Microbiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Peptidoglycan/analysis, Peptones/metabolism, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature | Metabolism |
| Phylogeny | 31199222 | Clostridium prolinivorans sp. nov., a thermophilic bacterium isolated from an anaerobic reactor degrading propionate. | Huang Y, Wei Z, Cong L, Qiu Z, Chen R, Deng Y, Zhang Y, Fan H, Ma S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003523 | 2019 | Anaerobiosis, Bacterial Typing Techniques, Base Composition, Bioreactors/*microbiology, Clostridium/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, Propionates/metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21883 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27788 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27788) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88788 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398315.1 |