Name: Clostridium swellfunianum S11-3-10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130249

Type strain:

Species: Clostridium swellfunianum

Strain Designation: S11-3-10

Culture col. no.: DSM 27788, CICC 10730, JCM 19606

Strain history: W.-X. Zhang S11-3-10.

NCBI tax ID(s): 1367462 (species)

SI-ID 398315

DSM 27788

Section

Clostridium swellfunianum S11-3-10 is an anaerobe, mesophilic bacterium that was isolated from pit mud of the Chinese Luzhou-flavor liquor manufacturer.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium swellfunianum**
	Full Scientific Name (LPSN)	Clostridium swellfunianum Liu et al. 2015

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21883]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #21883]

Culture medium growth

[Ref.: #21883]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21883]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21883]			growth	35 °C
[Ref.: #67770]			growth	35 °C

[Ref.: #21883]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21883]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21883]	Sample type/isolated from	pit mud of the Chinese Luzhou-flavor liquor manufacturer
[Ref.: #21883]	Host species	Luzhou-flavor
[Ref.: #21883]	Geographic location (country and/or sea, region)	Sichuan province, Chengdu city, Swellfun Co. Ltd
[Ref.: #21883]	Country	China
[Ref.: #21883]	Country ISO 3 Code	CHN
[Ref.: #21883]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Pit mud of the Luzhou-flavor liquor manufacturer
[Ref.: #67770]	Host species	Luzhou-flavor
[Ref.: #67770]	Geographic location (country and/or sea, region)	Swellfun Co., Ltd., Sichuan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Fermented
#Environmental	#Terrestrial	#Mud (Sludge)
#Engineered	#Food production	#Beverage

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB838978 (>99% sequence identity) for Clostridium swellfunianum subclade from Microbeatlas

Aquatic Samples	62
Soil Samples	138
Animal Samples	36
Plant Samples	5
Total Samples	241

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21883]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21883]	Clostridium swellfunianum gene for 16S ribosomal RNA, partial sequence	AB838978	1466	ENA	1367462 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Clostridium swellfunianum CICC 10730	GCA_023656515	contig	GenBank	1367462 tax ID	*

[Ref.: #21883]

GC-content

36.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridium swellfunianum CICC 10730 NCBI: GCA_023656515.1
[Ref.: #69480]	flagellated	yes	57.811	no
[Ref.: #69480]	gram-positive	yes	75.109	no
[Ref.: #69480]	anaerobic	yes	95.708	yes
[Ref.: #69480]	aerobic	no	96.783	no
[Ref.: #69480]	halophile	no	92.355	no
[Ref.: #69480]	spore-forming	yes	91.641	no
[Ref.: #69480]	motile	yes	85.211	no
[Ref.: #69480]	glucose-ferment	yes	65.365	no
[Ref.: #69480]	thermophile	no	96.216	yes
[Ref.: #69480]	glucose-util	yes	93.525	no

Availability in culture collections External links

[Ref.: #21883]

Culture collection no.

DSM 27788, CICC 10730, JCM 19606

[Ref.: #88788]

SI-ID 398315

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Clostridium prolinivorans sp. nov., a thermophilic bacterium isolated from an anaerobic reactor degrading propionate.	Huang Y, Wei Z, Cong L, Qiu Z, Chen R, Deng Y, Zhang Y, Fan H, Ma S	Int J Syst Evol Microbiol	10.1099/ijsem.0.003523	2019	*
Phylogeny	Clostridium swellfunianum sp. nov., a novel anaerobic bacterium isolated from the pit mud of Chinese Luzhou-flavor liquor production.	Liu C, Huang D, Liu L, Zhang J, Deng Y, Chen L, Zhang W, Wu Z, Fan A, Lai D, Dai L	Antonie Van Leeuwenhoek	10.1007/s10482-014-0251-z	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21883

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27788

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88788

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398315.1 )

* These data were automatically processed and therefore are not curated

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Clostridium swellfunianum CICC 10730

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