Strain identifier

BacDive ID: 130226

Type strain: Yes

Species: Brevibacterium jeotgali

Strain Designation: SJ5-8

Strain history: C. O. Jeon SJ5-8.

NCBI tax ID(s): 1262550 (species)

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General

@ref: 21537

BacDive-ID: 130226

DSM-Number: 29217

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped

description: Brevibacterium jeotgali SJ5-8 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from seau-jeot , a traditional fermented seafood.

NCBI tax id

  • NCBI tax id: 1262550
  • Matching level: species

strain history

@refhistory
21537<- KACC; KACC 16911
67770C. O. Jeon SJ5-8.

doi: 10.13145/bacdive130226.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Brevibacteriaceae
  • genus: Brevibacterium
  • species: Brevibacterium jeotgali
  • full scientific name: Brevibacterium jeotgali Choi et al. 2013

@ref: 21537

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Brevibacteriaceae

genus: Brevibacterium

species: Brevibacterium jeotgali

full scientific name: Brevibacterium jeotgali Choi et al. 2013

strain designation: SJ5-8

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
30994positive1.1 µm0.5 µmrod-shapedno
69480no93.335
69480positive100

Culture and growth conditions

culture medium

  • @ref: 21537
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21537positivegrowth28mesophilic
30994positivegrowth10-37
30994positiveoptimum30mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
30994positivegrowth6.0-9.0alkaliphile
30994positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 30994
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
30994no
69481no100
69480no99.996

halophily

@refsaltgrowthtested relationconcentration
30994NaClpositivegrowth0-14 %
30994NaClpositiveoptimum5 %

observation

@refobservation
30994aggregates in clumps
67770quinones: MK-8(H2)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
30994620642,3-butanediol+carbon source
3099415963ribitol+carbon source
3099416449alanine+carbon source
30994286442-oxopentanoate+carbon source
3099417057cellobiose+carbon source
3099415740formate+carbon source
3099424148galactonate+carbon source
3099424175galacturonate+carbon source
309945417glucosamine+carbon source
3099417234glucose+carbon source
3099417754glycerol+carbon source
3099415428glycine+carbon source
3099424996lactate+carbon source
3099417716lactose+carbon source
30994506227N-acetylglucosamine+carbon source
3099428044phenylalanine+carbon source
3099426271proline+carbon source
3099417148putrescine+carbon source
3099426490quinate+carbon source
3099426546rhamnose+carbon source
3099430031succinate+carbon source
3099427082trehalose+carbon source
3099453423tween 40+carbon source
3099453426tween 80+carbon source
3099416704uridine+carbon source
3099417632nitrate+reduction

enzymes

@refvalueactivityec
30994acid phosphatase+3.1.3.2
30994alkaline phosphatase+3.1.3.1
30994gelatinase+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinenthost species
21537seau-jeot (shrimp jeotgal), a traditional fermented seafoodRepublic of KoreaKORAsia
67770Seau-jeot (shrimp jeotgal), a traditional fermented seafoodRepublic of KoreaKORAsiaSeau-jeot

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Seafood
#Engineered#Food production#Fermented

taxonmaps

  • @ref: 69479
  • File name: preview.99_172665.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15817;96_1988;97_2390;98_38109;99_172665&stattab=map
  • Last taxonomy: Brevibacterium
  • 16S sequence: JX152779
  • Sequence Identity:
  • Total samples: 1119
  • soil counts: 244
  • aquatic counts: 36
  • animal counts: 824
  • plant counts: 15

Safety information

risk assessment

  • @ref: 21537
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21537
  • description: Brevibacterium jeotgali strain SJ5-8 16S ribosomal RNA gene, partial sequence
  • accession: JX152779
  • length: 1424
  • database: ena
  • NCBI tax ID: 1262550

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Brevibacterium jeotgali DSM 29217GCA_007828155contigncbi1262550
66792Brevibacterium jeotgali strain DSM 292171262550.4wgspatric1262550
66792Brevibacterium jeotgali DSM 292172806310637draftimg1262550
66792Brevibacterium jeotgali SJ5-82600255371draftimg1262550
67770Brevibacterium jeotgali SJ5-8GCA_900169175contigncbi1262550

GC content

@refGC-contentmethod
2153769.3
6777069.3thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno92.039yes
gram-positiveyes91.381no
anaerobicno99.28yes
aerobicyes94.093yes
halophileyes65.803no
spore-formingno92.528no
thermophileno98.99yes
glucose-utilyes84.425yes
flagellatedno98.342yes
glucose-fermentno91.8no

External links

@ref: 21537

culture collection no.: DSM 29217, JCM 18571, KACC 16911

straininfo link

  • @ref: 88768
  • straininfo: 407126

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23543497Brevibacterium jeotgali sp. nov., isolated from jeotgal, a traditional Korean fermented seafood.Choi EJ, Lee SH, Jung JY, Jeon COInt J Syst Evol Microbiol10.1099/ijs.0.049197-02013Base Composition, Brevibacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, *Fermentation, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Polyamines/analysis, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seafood/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny26429721Brevibacterium metallicus sp. nov., an endophytic bacterium isolated from roots of Prosopis laegivata grown at the edge of a mine tailing in Mexico.Roman-Ponce B, Li YH, Vasquez-Murrieta MS, Sui XH, Chen WF, Estrada-de Los Santos P, Wang ETArch Microbiol10.1007/s00203-015-1156-62015Bacterial Typing Techniques, Base Composition/genetics, Brevibacterium/classification/genetics/*isolation & purification/*metabolism, DNA, Bacterial/genetics, Fatty Acids/analysis, Metals, Heavy/*metabolism, Mexico, Mining, Nucleic Acid Hybridization, Phylogeny, Plant Roots/*microbiology, Prosopis/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Symbiosis/*physiology, Vitamin K 2/analysisMetabolism

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21537Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29217Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29217)
30994Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172732428776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
88768Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407126.1