Strain identifier

BacDive ID: 130139

Type strain: Yes

Species: Terriglobus aquaticus

Strain Designation: 03SUJ4

Strain history: <- CN Seong, Sunchon Natl. Univ.

NCBI tax ID(s): 940139 (species)

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General

@ref: 21834

BacDive-ID: 130139

DSM-Number: 29483

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Terriglobus aquaticus 03SUJ4 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Freshwater from the intake tower of Juam artificial reservoir in the Jeonam.

NCBI tax id

  • NCBI tax id: 940139
  • Matching level: species

strain history

@refhistory
21834<- KCTC <- C. N. Seong, Sunchon Natl. Univ., Korea; 03SUJ4
67770C. N. Seong 03SUJ4.
67771<- CN Seong, Sunchon Natl. Univ.

doi: 10.13145/bacdive130139.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/acidobacteriota
  • domain: Bacteria
  • phylum: Acidobacteriota
  • class: Terriglobia
  • order: Terriglobales
  • family: Acidobacteriaceae
  • genus: Terriglobus
  • species: Terriglobus aquaticus
  • full scientific name: Terriglobus aquaticus Baik et al. 2013

@ref: 21834

domain: Bacteria

phylum: Acidobacteria

class: Acidobacteriia

order: Acidobacteriales

family: Acidobacteriaceae

genus: Terriglobus

species: Terriglobus aquaticus

full scientific name: Terriglobus aquaticus Baik et al. 2013

strain designation: 03SUJ4

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
31047negative1.7 µm0.7 µmrod-shapedno
67771negative

colony morphology

  • @ref: 21834
  • type of hemolysis: gamma
  • incubation period: 3-7 days

pigmentation

  • @ref: 31047
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 21834
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21834positivegrowth25mesophilic
31047positivegrowth15-30
31047positiveoptimum25mesophilic
67770positivegrowth25mesophilic
67771positivegrowth25mesophilic

culture pH

@refabilitytypepH
31047positivegrowth06-07
31047positiveoptimum6

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31047aerobe
67771aerobe

spore formation

  • @ref: 31047
  • spore formation: no

halophily

  • @ref: 31047
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-1.0 %

observation

  • @ref: 31047
  • observation: aggregates in clumps

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3104722599arabinose+carbon source
3104722653asparagine+carbon source
3104735391aspartate+carbon source
3104717057cellobiose+carbon source
3104723652dextrin+carbon source
3104728757fructose+carbon source
3104717234glucose+carbon source
3104729987glutamate+carbon source
3104724996lactate+carbon source
3104717716lactose+carbon source
3104717306maltose+carbon source
3104730031succinate+carbon source
3104727082trehalose+carbon source
310474853esculin+hydrolysis
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
21834catalase+1.11.1.6
31047acid phosphatase+3.1.3.2
31047alkaline phosphatase+3.1.3.1
31047alpha-galactosidase+3.2.1.22
31047catalase+1.11.1.6
31047urease+3.5.1.5
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
21834-----+-+----------+-+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
21834Freshwater from the intake tower of Juam artificial reservoir in the JeonamRepublic of KoreaKORAsia
67770Freshwater from the intake tower of Juam artificial reservoir in the JeonamRepublic of KoreaKORAsia
67771From fresh waterRepublic of KoreaKORAsiaWoopo

isolation source categories

Cat1Cat2Cat3
#Engineered#Built environment#Water reservoir (Aquarium/pool)
#Environmental#Aquatic#Freshwater

Safety information

risk assessment

  • @ref: 21834
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21834
  • description: Terriglobus aquaticus strain 03SUJ4 16S ribosomal RNA gene, partial sequence
  • accession: HQ436501
  • length: 1448
  • database: ena
  • NCBI tax ID: 940139

Genome sequences

  • @ref: 66792
  • description: Terriglobus aquaticus 03SUJ4
  • accession: GCA_025685415
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 940139

GC content

  • @ref: 31047
  • GC-content: 63.2

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno93.19yes
flagellatedno97.599no
gram-positiveno96.204no
anaerobicno98.672yes
aerobicyes87.609no
halophileno94.643yes
spore-formingno94.947no
glucose-fermentno89.496no
thermophileno86.078no
glucose-utilyes82.235no

External links

@ref: 21834

culture collection no.: DSM 29483, JCM 17517, KCTC 23332

straininfo link

  • @ref: 88693
  • straininfo: 401653

literature

  • topic: Phylogeny
  • Pubmed-ID: 23990651
  • title: Terriglobus aquaticus sp. nov., isolated from an artificial reservoir.
  • authors: Baik KS, Choi JS, Kwon J, Park SC, Hwang YM, Kim MS, Kim EM, Seo DC, Cho JS, Seong CN
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.050724-0
  • year: 2013
  • mesh: Acidobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fresh Water/*microbiology, Genes, Bacterial, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21834Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29483Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29483)
31047Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172737728776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68369Automatically annotated from API 20NE
88693Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401653.1