Terriglobus aquaticus (DSM 29483, JCM 17517, KCTC 23332)

Name: Terriglobus aquaticus (DSM 29483, JCM 17517, KCTC 23332)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130139

Type strain

Strain Designation 03SUJ4

Culture col. no. DSM 29483 JCM 17517 KCTC 23332 03SUJ4

NCBI tax ID(s) 940139

Special Collections DSMZ JCM KCTC Literature strains

History DSMZ <- KCTC <- C. N. Seong, Sunchon Natl. Univ., Korea; 03SUJ4 JCM <-- C. N. Seong 03SUJ4. KCTC <- CN Seong, Sunchon Natl. Univ.

Links

Terriglobus aquaticus 03SUJ4 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Freshwater from the intake tower of Juam artificial reservoir in the Jeonam.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 401653

KCTC 23332,JCM 17517,DSM 29483

@ref 20215

Last LPSN update 2026-05-29 08:37:18

Domain Bacteria

Phylum Acidobacteriota

Class Terriglobia

Order Terriglobales

Family Acidobacteriaceae

Genus Terriglobus

Species Terriglobus aquaticus

Full scientific name Terriglobus aquaticus Baik et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31047	negative	1.7 µm	0.7 µm	rod-shaped
67771	negative
125439	negative				94.596
125438	negative				94.941

Colony morphology

@ref	Type of hemolysis	Hemolysis ability	Incubation period
21834	gamma	0	3-7 days

Pigmentation

31047

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21834	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
21834	positive	growth	25
31047	positive	growth	15-30
31047	positive	optimum	25
67770	positive	growth	25
67771	positive	growth	25

Culture pH

@ref	Ability	Type	PH
31047	positive	optimum	6
31047	positive	growth	06-07

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31047	aerobe
67771	aerobe
125439	obligate aerobe	99.309

Spore formation

@ref	Spore formation	Confidence
31047
125439		95.285

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31047	NaCl	positive	growth	0-1.0 %

Observation

31047

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
31047	22599 ChEBI	arabinose	+	carbon source
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
31047	22653 ChEBI	asparagine	+	carbon source
31047	35391 ChEBI	aspartate	+	carbon source
31047	17057 ChEBI	cellobiose	+	carbon source
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
31047	23652 ChEBI	dextrin	+	carbon source
31047	4853 ChEBI	esculin	+	hydrolysis
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
31047	28757 ChEBI	fructose	+	carbon source
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
31047	17234 ChEBI	glucose	+	carbon source
31047	29987 ChEBI	glutamate	+	carbon source
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
31047	24996 ChEBI	lactate	+	carbon source
31047	17716 ChEBI	lactose	+	carbon source
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
31047	17306 ChEBI	maltose	+	carbon source
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
31047	30031 ChEBI	succinate	+	carbon source
31047	27082 ChEBI	trehalose	+	carbon source
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
31047	acid phosphatase	+	3.1.3.2
31047	alkaline phosphatase	+	3.1.3.1
31047	alpha-galactosidase	+	3.2.1.22
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
21834	catalase	+	1.11.1.6
31047	catalase	+	1.11.1.6
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	-		from API 20NE
31047	urease	+	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
21834	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	+	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Built environment	#Water reservoir (Aquarium/pool)
#Environmental	#Aquatic	#Freshwater

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
21834	Freshwater from the intake tower of Juam artificial reservoir in the Jeonam		Republic of Korea	KOR	Asia
67770	Freshwater from the intake tower of Juam artificial reservoir in the Jeonam		Republic of Korea	KOR	Asia
67771	From fresh water	Woopo	Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21834	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2568541v1 assembly for Terriglobus aquaticus 03SUJ4	contig	GCA_025685415	940139.3	8047854396	940139	77.99
124043	ASM3953785v1 assembly for Terriglobus aquaticus JCM 17517	contig	GCA_039537855			940139	76.14

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21834	Terriglobus aquaticus strain 03SUJ4 16S ribosomal RNA gene, partial sequence	HQ436501	1448		940139

GC content

31047

GC-content (mol%)63.2

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2568541v1 assembly for Terriglobus aquaticus 03SUJ4
NCBI: GCA_025685415

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.31	no
125439	motility	BacteriaNetⓘ	no	72.03	no
125439	gram_stain	BacteriaNetⓘ	negative	94.60	no
125439	spore_formation	BacteriaNetⓘ	no	95.29	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Terriglobus aquaticus 03SUJ4
NCBI: GCA_025685415.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	94.94	no
125438	anaerobic	anaerobicⓘ	no	91.14	yes
125438	aerobic	aerobicⓘ	yes	77.94	yes
125438	spore-forming	spore-formingⓘ	no	82.20	yes
125438	thermophilic	thermophileⓘ	no	89.24	yes
125438	flagellated	motile2+ⓘ	no	79.77	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Terriglobus aquaticus sp. nov., isolated from an artificial reservoir.	Baik KS, Choi JS, Kwon J, Park SC, Hwang YM, Kim MS, Kim EM, Seo DC, Cho JS, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.050724-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21834	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29483
#27377	IJSEM 4744 2013 ( DOI 10.1099/ijs.0.050724-0 , PubMed 23990651 )
#31047	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27377
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68369	Automatically annotated from API 20NE .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Terriglobus aquaticus (DSM 29483, JCM 17517, KCTC 23332)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_025685415

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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