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Strain identifier

BacDive ID: 12995

Type strain: No

Species: Pseudomonas stutzeri

Strain Designation: CMT.9.A

Strain history: <- D. Werner; CMT.9.A

For citation purpose refer to the digital object identifier (doi) of the current version.
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@ref: 1605

BacDive-ID: 12995

DSM-Number: 4166

keywords: genome sequence, Bacteria, mesophilic, human pathogen

description: Pseudomonas stutzeri CMT.9.A is a mesophilic human pathogen that was isolated from rhizosphere of Sorghum mutans cv. CSV5.

NCBI tax id

NCBI tax idMatching level

strain history: <- D. Werner; CMT.9.A

doi: 10.13145/bacdive12995.20221219.7.1

Name and taxonomic classification


  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas stutzeri
  • full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946 (Approved Lists 1980)
  • synonyms

    20215Stutzerimonas chloritidismutans
    20215Pseudomonas perfectomarinus
    20215Bacterium stutzeri
    20215Pseudomonas kunmingensis
    20215Pseudomonas chloritidismutans
    20215Stutzerimonas kunmingensis
    20215Stutzerimonas stutzeri
    20215Stutzerimonas perfectomarina
    20215Pseudomonas perfectomarina

@ref: 1605

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas stutzeri

full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946

strain designation: CMT.9.A

type strain: no


cell morphology

@refmotilityconfidencegram stain

Culture and growth conditions

culture medium

1605NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
1605NITROGEN-FREE MEDIUM FOR PSEUDOMONAS STUTZERI (DSMZ Medium 460)yeshttps://mediadive.dsmz.de/medium/460Name: NITROGEN-FREE MEDIUM FOR PSEUDOMONAS STUTZERI (DSMZ Medium 460) Composition: DL-Na-malate 6.6 g/l K2HPO4 0.5 g/l Yeast extract 0.2 g/l MgSO4 x 7 H2O 0.2 g/l NaCl 0.1 g/l FeCl3 x 6 H2O 0.015 g/l Distilled water

culture temp

  • @ref: 1605
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.12

compound production

  • @ref: 1605
  • compound: nitrogenase


  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 92.688

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836927897tryptophan-energy source

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -


68369cytochrome oxidase+
68369arginine dihydrolase-



Isolation, sampling and environmental information


  • @ref: 1605
  • sample type: rhizosphere of Sorghum mutans cv. CSV5
  • host species: Sorghum mutans
  • country: India
  • origin.country: IND
  • continent: Asia

isolation source categories

#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Rhizosphere

Safety information

risk assessment

  • @ref: 1605
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas stutzeri DSM 4166 DSM 4166GCA_000195105completencbi996285
66792Pseudomonas stutzeri DSM 4166996285.3completepatric996285
66792Pseudomonas stutzeri CMT.A.9, DSM 4166651053060completeimg996285
66792Staphylococcus aureus st378GCA_900038325contigpatric1280

GC content

  • @ref: 1605
  • GC-content: 66.2

External links

@ref: 1605

culture collection no.: DSM 4166

straininfo link

  • @ref: 20218
  • passport: http://www.straininfo.net/strains/158673


Genetics21515765Complete genome sequence of the nitrogen-fixing and rhizosphere-associated bacterium Pseudomonas stutzeri strain DSM4166.Yu H, Yuan M, Lu W, Yang J, Dai S, Li Q, Yang Z, Dong J, Sun L, Deng Z, Zhang W, Chen M, Ping S, Han Y, Zhan Y, Yan Y, Jin Q, Lin MJ Bacteriol10.1128/JB.05039-112011DNA, Bacterial/*chemistry/*genetics, Evolution, Molecular, *Genome, Bacterial, Molecular Sequence Data, Nitrogen/metabolism, Nitrogen Fixation, Pseudomonas stutzeri/*genetics/isolation & purification/metabolism, Rhizosphere, Sequence Analysis, DNA, Soil Microbiology, Sorghum/microbiologyMetabolism
Enzymology22226947Characterization of Halomonas sp. strain H11 alpha-glucosidase activated by monovalent cations and its application for efficient synthesis of alpha-D-glucosylglycerol.Ojima T, Saburi W, Yamamoto T, Kudo TAppl Environ Microbiol10.1128/AEM.07514-112012Amino Acid Sequence, Cations, Monovalent/*metabolism, DNA, Bacterial/chemistry/genetics, Electrophoresis, Polyacrylamide Gel, Enzyme Activators/*metabolism, Enzyme Stability, Glucosides/*metabolism, Halomonas/*enzymology/genetics, Hydrogen-Ion Concentration, Kinetics, Molecular Sequence Data, Molecular Weight, Sequence Alignment, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Substrate Specificity, Temperature, alpha-Glucosidases/chemistry/genetics/*metabolismMetabolism
Enzymology24028969Monoterpenes with antibacterial activities from a Cameroonian medicinal plant Canthium Multiflorum (Rubiaceae).Kouam SF, Ngouonpe AW, Bullach A, Lamshoft M, Kuigoua GM, Spiteller MFitoterapia10.1016/j.fitote.2013.08.0252013Animals, Anti-Bacterial Agents/isolation & purification/*pharmacology, Antineoplastic Agents, Phytogenic/isolation & purification/pharmacology/therapeutic use, Antiparasitic Agents/isolation & purification/*pharmacology, Bacteria/*drug effects, Cameroon, Cell Line, Tumor, Iridoids/isolation & purification/*pharmacology, Molecular Structure, Monoterpenes/isolation & purification/*pharmacology, Neoplasms/drug therapy, Phytotherapy, Plant Components, Aerial, Plant Extracts/chemistry/*pharmacology, Plants, Medicinal, Plasmodium falciparum/drug effects, Rats, Rubiaceae/*chemistryPhylogeny
Phylogeny25251496The nitrogen-fixation island insertion site is conserved in diazotrophic Pseudomonas stutzeri and Pseudomonas sp. isolated from distal and close geographical regions.Venieraki A, Dimou M, Vezyri E, Vamvakas A, Katinaki PA, Chatzipavlidis I, Tampakaki A, Katinakis PPLoS One10.1371/journal.pone.01058372014Bacterial Proteins/genetics, Base Sequence, China, DNA, Bacterial/chemistry/genetics, Evolution, Molecular, Genetic Variation, Genomic Islands/*genetics, Geography, Germany, Greece, Models, Genetic, Molecular Sequence Data, Nitrogen Fixation/*genetics, Phylogeny, Pseudomonas/classification/*genetics, Pseudomonas stutzeri/*genetics, RNA, Ribosomal, 16S/genetics, Repetitive Sequences, Nucleic Acid/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Species SpecificityGenetics
Metabolism27233093Comparative genomic, proteomic and exoproteomic analyses of three Pseudomonas strains reveals novel insights into the phosphorus scavenging capabilities of soil bacteria.Lidbury ID, Murphy AR, Scanlan DJ, Bending GD, Jones AM, Moore JD, Goodall A, Hammond JP, Wellington EMEnviron Microbiol10.1111/1462-2920.133902016Crops, Agricultural/growth & development/microbiology, Genomics, Phosphates/metabolism, Phosphorus/*metabolism, Proteomics, Pseudomonas fluorescens/*genetics/metabolism, Pseudomonas putida/*genetics/metabolism, Pseudomonas stutzeri/*genetics/metabolism, Regulon, Rhizosphere, *Soil MicrobiologyGenetics
Metabolism28526844Identification of extracellular glycerophosphodiesterases in Pseudomonas and their role in soil organic phosphorus remineralisation.Lidbury IDEA, Murphy ARJ, Fraser TD, Bending GD, Jones AME, Moore JD, Goodall A, Tibbett M, Hammond JP, Scanlan DJ, Wellington EMHSci Rep10.1038/s41598-017-02327-62017Bacterial Proteins/genetics/metabolism, Extracellular Space/metabolism, Metagenome, Metagenomics/methods, Models, Biological, Phosphoric Diester Hydrolases/genetics/*metabolism, Phosphorus/*metabolism, Pseudomonas/classification/genetics/*metabolism, *Soil MicrobiologyGenetics
Metabolism30461205Engineering Pseudomonas protegens Pf-5 to improve its antifungal activity and nitrogen fixation.Jing X, Cui Q, Li X, Yin J, Ravichandran V, Pan D, Fu J, Tu Q, Wang H, Bian X, Zhang YMicrob Biotechnol10.1111/1751-7915.133352018*Bacterial Proteins, *Biological Control Agents, *Nitrogen Fixation, Nitrogenase/metabolism, Plant Roots, *Protein Engineering, Pseudomonas, *Pseudomonas stutzeri/metabolismBiotechnology


1605Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4166)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4166
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)