Archive BacDiveID:10.13145/bacdive12682.20230509.8.1

Strain identifier

BacDive ID: 12682

Type strain:

Species: Pseudoalteromonas undina

Strain Designation: 272

Strain history: CIP <- 1994, NCIMB <- ATCC <- P. Baumann: strain 272 <- K.Y. Chan

NCBI tax ID(s): 1117320 (strain), 43660 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 2426

BacDive-ID: 12682

DSM-Number: 6065

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile

description: Pseudoalteromonas undina 272 is a mesophilic, motile bacterium that was isolated from seawater.

NCBI tax id

NCBI tax id	Matching level
43660	species
1117320	strain

strain history

@ref	history
2426	<- ATCC <- P. Baumann, 272 <- K.Y. Chan
67770	IAM 12922 <-- ATCC 29660 <-- P. Baumann 272 <-- K. Y. Chan.
123731	CIP <- 1994, NCIMB <- ATCC <- P. Baumann: strain 272 <- K.Y. Chan

doi: 10.13145/bacdive12682.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Alteromonadales
family: Pseudoalteromonadaceae
genus: Pseudoalteromonas
species: Pseudoalteromonas undina
full scientific name: Pseudoalteromonas undina (Chan et al. 1978) Gauthier et al. 1995
synonyms
- @ref: 20215
- synonym: Alteromonas undina

@ref: 2426

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Pseudoalteromonadaceae

genus: Pseudoalteromonas

species: Pseudoalteromonas undina

full scientific name: Pseudoalteromonas undina (Chan et al. 1978) Gauthier et al. 1995

strain designation: 272

type strain: yes

Morphology

cell morphology

@ref	motility	confidence	gram stain
69480	yes	97.83
69480		99.986	negative

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
2426	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	yes	https://mediadive.dsmz.de/medium/514	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
42025	Marine agar (MA)	yes		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
123731	CIP Medium 13	yes	https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@ref	growth	type	temperature	range
2426	positive	growth	30	mesophilic
42025	positive	growth	22	psychrophilic
67770	positive	growth	25	mesophilic

Physiology and metabolism

spore formation

@ref	spore formation	confidence
69481	no	100
69480	no	99.869

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent
2426	seawater	California	USA	USA	North America
67770	Seawater	northern California	USA	USA	North America
123731	Environment, Seawater	California	United States of America	USA	North America

isolation source categories

Cat1: #Environmental
Cat2: #Aquatic
Cat3: #Marine

taxonmaps

@ref: 69479
File name: preview.99_1002.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_57;96_122;97_129;98_145;99_1002&stattab=map
Last taxonomy: Pseudoalteromonas
16S sequence: AB681919
Sequence Identity:
Total samples: 3222
soil counts: 24
aquatic counts: 2792
animal counts: 384
plant counts: 22

Safety information

risk assessment

@ref	biosafety level	biosafety level comment
2426	1	Risk group (German classification)
123731	1	Risk group (French classification)

Sequence information

16S sequences

@ref	description	accession	length	database	NCBI tax ID
20218	Pseudoalteromonas undina gene for 16S rRNA, partial sequence, strain: NBRC 103039	AB681919	1393	ena	43660
20218	A.undina 16S rRNA gene (NCIMB 2128T)	X82140	1428	ena	43660

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Pseudoalteromonas undina NCIMB 2128	1117320.3	wgs	patric	1117320
66792	Pseudoalteromonas undina NCIMB 2128	2541047161	draft	img	1117320
67770	Pseudoalteromonas undina DSM 6065	GCA_000238275	chromosome	ncbi	43660

Genome-based predictions

predictions

trait	prediction	confidence	training_data
spore-forming	no	100	no
motile	yes	91.991	no
motile	yes	91.991	no
flagellated	yes	87.553	no
flagellated	yes	87.553	no
gram-positive	no	98.969	no
gram-positive	no	98.969	no
anaerobic	no	97.04	no
anaerobic	no	97.04	no
aerobic	yes	84.763	no
aerobic	yes	84.763	no
halophile	no	55.406	no
halophile	no	55.406	no
spore-forming	no	94.591	no
spore-forming	no	94.591	no
thermophile	no	99.121	yes
glucose-util	yes	89.026	no
glucose-util	yes	89.026	no
thermophile	no	99.121	yes
glucose-ferment	no	76.241	no
glucose-ferment	no	76.241	no

External links

@ref: 2426

culture collection no.: DSM 6065, ATCC 29660, JCM 20773, CCUG 16141, CIP 104109, IAM 12922, LMG 2880, NBRC 103039, NCIMB 2128

straininfo link

@ref: 81893
straininfo: 883

literature

topic: Phylogeny
Pubmed-ID: 19897616
title: Pseudoalteromonas lipolytica sp. nov., isolated from the Yangtze River estuary.
authors: Xu XW, Wu YH, Wang CS, Gao XH, Wang XG, Wu M
journal: Int J Syst Evol Microbiol
DOI: 10.1099/ijs.0.017673-0
year: 2009
mesh: China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/*metabolism, Molecular Sequence Data, Phylogeny, Pseudoalteromonas/*classification/genetics/*isolation & purification/metabolism, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology
topic2: Metabolism

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
2426	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6065)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-6065
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
42025	Curators of the CIP		https://brclims.pasteur.fr/brcWeb/souche/detail/1/15982
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481	Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch		10.21203/rs.3.rs-2527258/v1	Predictions based on the model GenomeNet Sporulation v. 1
81893	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID883.1	StrainInfo: A central database for resolving microbial strain identifiers
123731	Curators of the CIP	Collection of Institut Pasteur (CIP 104109)	https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104109

General

NCBI tax id

strain history

Name and taxonomic classification

LPSN

synonyms

Morphology

cell morphology

Culture and growth conditions

culture medium

culture temp

Physiology and metabolism

spore formation

Isolation, sampling and environmental information

isolation

isolation source categories

taxonmaps

Safety information

risk assessment

Sequence information

16S sequences

Genome sequences

Genome-based predictions

predictions

External links

straininfo link

literature

Reference