Name: Pseudoalteromonas undina 272
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12682

Type strain:

Species: Pseudoalteromonas undina

Strain Designation: 272

Culture col. no.: DSM 6065, ATCC 29660, JCM 20773, CCUG 16141, CIP 104109, IAM 12922, LMG 2880, NBRC 103039, NCIMB 2128

Strain history: CIP <- 1994, NCIMB <- ATCC <- P. Baumann: strain 272 <- K.Y. Chan

NCBI tax ID(s): 1117320 (strain), 43660 (species)

SI-ID 883

LMG 2880, ATCC 29660, CCUG 16141, DSM 6065, NCMB 2128, CIP 104109, NCIMB 2128, IAM12922, CECT 5006, NCIB 2128, JCM 20773, NBRC 103039

Section

Pseudoalteromonas undina 272 is a mesophilic, motile bacterium that was isolated from seawater.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Pseudoalteromonadaceae*
	Genus	*Pseudoalteromonas*
	Species	**Pseudoalteromonas undina**
	Full Scientific Name (LPSN)	Pseudoalteromonas undina (Chan et al. 1978) Gauthier et al. 1995

Synonym

Alteromonas undina

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.986

[Ref.: #69480]	Motility	yes Confidence in %97.83

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2426]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #2426]

Culture medium growth

[Ref.: #2426]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2426]

Culture medium composition

expand / minimize

[Ref.: #42025]

Culture medium

Marine agar (MA)

[Ref.: #42025]

Culture medium growth

[Ref.: #42025]

Culture medium composition

expand / minimize

[Ref.: #123731]

Culture medium

CIP Medium 13

[Ref.: #123731]

Culture medium growth

[Ref.: #123731]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #2426]	growth	30 °C
[Ref.: #42025]	growth	22 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #2426]	Temperature range	mesophilic
[Ref.: #42025]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.869

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2426]	Sample type/isolated from	seawater
[Ref.: #2426]	Geographic location (country and/or sea, region)	California
[Ref.: #2426]	Country	USA
[Ref.: #2426]	Country ISO 3 Code	USA
[Ref.: #2426]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Seawater
[Ref.: #67770]	Geographic location (country and/or sea, region)	northern California
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America

[Ref.: #123731]	Sample type/isolated from	Environment, Seawater
[Ref.: #123731]	Geographic location (country and/or sea, region)	California
[Ref.: #123731]	Country	United States of America
[Ref.: #123731]	Country ISO 3 Code	USA
[Ref.: #123731]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB681919 (>99% sequence identity) for Pseudoalteromonas from Microbeatlas

Aquatic Samples	2792
Soil Samples	24
Animal Samples	384
Plant Samples	22
Total Samples	3222

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2426]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123731]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Pseudoalteromonas undina gene for 16S rRNA, partial sequence, strain: NBRC 103039	AB681919	1393	ENA	43660 tax ID	*
[Ref.: #20218]	A.undina 16S rRNA gene (NCIMB 2128T)	X82140	1428	ENA	43660 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudoalteromonas undina DSM 6065	GCA_000238275	chromosome	GenBank	43660 tax ID
[Ref.: #66792]	Pseudoalteromonas undina NCIMB 2128	1117320.3	wgs	PATRIC	1117320 tax ID	*
[Ref.: #66792]	Pseudoalteromonas undina NCIMB 2128	2541047161	draft	JGI IMG/M	1117320 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudoalteromonas undina DSM 6065 NCBI: GCA_000238275.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudoalteromonas undina DSM 6065 NCBI: GCA_000238275.3
[Ref.: #69480]	motile	yes	91.991	no
[Ref.: #69480]	flagellated	yes	87.553	no
[Ref.: #69480]	gram-positive	no	98.969	no
[Ref.: #69480]	anaerobic	no	97.04	no
[Ref.: #69480]	aerobic	yes	84.763	no
[Ref.: #69480]	halophile	no	55.406	no
[Ref.: #69480]	spore-forming	no	94.591	no
[Ref.: #69480]	glucose-util	yes	89.026	no
[Ref.: #69480]	thermophile	no	99.121	yes
[Ref.: #69480]	glucose-ferment	no	76.241	no
[Ref.: #69480]	motile	yes	91.991	no
[Ref.: #69480]	flagellated	yes	87.553	no
[Ref.: #69480]	gram-positive	no	98.969	no
[Ref.: #69480]	anaerobic	no	97.04	no
[Ref.: #69480]	aerobic	yes	84.763	no
[Ref.: #69480]	halophile	no	55.406	no
[Ref.: #69480]	spore-forming	no	94.591	no
[Ref.: #69480]	thermophile	no	99.121	yes
[Ref.: #69480]	glucose-util	yes	89.026	no
[Ref.: #69480]	glucose-ferment	no	76.241	no

Availability in culture collections External links

[Ref.: #2426]

Culture collection no.

DSM 6065, ATCC 29660, JCM 20773, CCUG 16141, CIP 104109, IAM 12922, LMG 2880, NBRC 103039, NCIMB 2128

[Ref.: #81893]

SI-ID 883

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudoalteromonas lipolytica sp. nov., isolated from the Yangtze River estuary.	Xu XW, Wu YH, Wang CS, Gao XH, Wang XG, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.017673-0	2009	*

References

#2426

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6065

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#42025 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81893

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID883.1 )

#123731 Collection of Institut Pasteur ; Curators of the CIP; CIP 104109
* These data were automatically processed and therefore are not curated

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Pseudoalteromonas undina DSM 6065

Pseudoalteromonas undina DSM 6065

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