Name: Pseudoalteromonas undina 272
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12682

Type strain:

Species: Pseudoalteromonas undina

Strain Designation: 272

Culture col. no.: DSM 6065, ATCC 29660, JCM 20773, CCUG 16141, CIP 104109, IAM 12922, LMG 2880, NBRC 103039, NCIMB 2128

Strain history: CIP <- 1994, NCIMB <- ATCC <- P. Baumann: strain 272 <- K.Y. Chan

NCBI tax ID(s): 1117320 (strain), 43660 (species)

SI-ID 883

LMG 2880, ATCC 29660, CCUG 16141, DSM 6065, NCMB 2128, CIP 104109, NCIMB 2128, IAM12922, CECT 5006, NCIB 2128, JCM 20773, NBRC 103039

Special Collections

Section

When using BacDive for research please cite our paper

Pseudoalteromonas undina 272 is a mesophilic bacterium that was isolated from seawater.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Pseudoalteromonadaceae*
	Genus	*Pseudoalteromonas*
	Species	**Pseudoalteromonas undina**
	Full Scientific Name (LPSN)	Pseudoalteromonas undina (Chan et al. 1978) Gauthier et al. 1995

Synonym

Alteromonas undina

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	negative Confidence in %99
[Ref.: #125439]	Gram stain	negative Confidence in %99.4

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2426]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #2426]

Culture medium growth

[Ref.: #2426]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2426]

Culture medium composition

expand / minimize

[Ref.: #42025]

Culture medium

Marine agar (MA)

[Ref.: #42025]

Culture medium growth

[Ref.: #42025]

Culture medium composition

expand / minimize

[Ref.: #123731]

Culture medium

CIP Medium 13

[Ref.: #123731]

Culture medium growth

[Ref.: #123731]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #2426]	growth	30 °C
[Ref.: #42025]	growth	22 °C
[Ref.: #67770]	growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

obligate aerobe Confidence in %99.3

[Ref.: #125439]

Ability of spore formation

no Confidence in %99.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2426]	Sample type/isolated from	seawater
[Ref.: #2426]	Geographic location (country and/or sea, region)	California
[Ref.: #2426]	Country	USA
[Ref.: #2426]	Country ISO 3 Code	USA
[Ref.: #2426]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Seawater
[Ref.: #67770]	Geographic location (country and/or sea, region)	northern California
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America

[Ref.: #123731]	Sample type/isolated from	Environment, Seawater
[Ref.: #123731]	Geographic location (country and/or sea, region)	California
[Ref.: #123731]	Country	United States of America
[Ref.: #123731]	Country ISO 3 Code	USA
[Ref.: #123731]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB681919 (>99% sequence identity) for Pseudoalteromonas from Microbeatlas

Aquatic Samples	2792
Soil Samples	24
Animal Samples	384
Plant Samples	22
Total Samples	3222

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2426]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123731]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Pseudoalteromonas undina gene for 16S rRNA, partial sequence, strain: NBRC 103039	AB681919	1393	GenBank ENA	43660 tax ID	*
[Ref.: #20218]	A.undina 16S rRNA gene (NCIMB 2128T)	X82140	1428	GenBank ENA	43660 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudoalteromonas undina DSM 6065	GCA_000238275	chromosome	GenBank ENA	43660 tax ID
[Ref.: #66792]	Pseudoalteromonas undina NCIMB 2128	1117320.3	wgs	PATRIC	1117320 tax ID	*
[Ref.: #66792]	Pseudoalteromonas undina NCIMB 2128	2541047161	draft	JGI IMG/M	1117320 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudoalteromonas undina DSM 6065 NCBI: GCA_000238275.4
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	99	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	96.084	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	75.259	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	86.421	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	99.444	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	89.517	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudoalteromonas undina NCIMB 2128 PATRIC: 1117320.3
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	99.3
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.4
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	72.1
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	99.1

Availability in culture collections External links

[Ref.: #2426]

Culture collection no.

DSM 6065, ATCC 29660, JCM 20773, CCUG 16141, CIP 104109, IAM 12922, LMG 2880, NBRC 103039, NCIMB 2128

[Ref.: #81893]

SI-ID 883

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudoalteromonas lipolytica sp. nov., isolated from the Yangtze River estuary.	Xu XW, Wu YH, Wang CS, Gao XH, Wang XG, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.017673-0	2009	*

References

#2426

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6065

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#42025 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#81893

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID883.1 )

#123731 Collection of Institut Pasteur ; Curators of the CIP; CIP 104109

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Pseudoalteromonas undina DSM 6065

Pseudoalteromonas undina NCIMB 2128

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