Strain identifier

BacDive ID: 12633

Type strain: Yes

Species: Acidipropionibacterium acidipropionici

Strain Designation: 14X, 0179

Strain history: CIP <- 1987, NCIB <- ATCC <- W.E.C. Moore, Virginia Polytechnic Inst., Blacksburg, USA: strain 0179 <- 1924, A. Prévot, Inst. Pasteur, Paris, France: strain 14X <- Orla-Jensen, Propionibacterium pentosaceum

NCBI tax ID(s): 1111734 (strain), 1748 (species)

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General

@ref: 1867

BacDive-ID: 12633

DSM-Number: 4900

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive, rod-shaped

description: Acidipropionibacterium acidipropionici 14X is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from Environment, soil.

NCBI tax id

NCBI tax idMatching level
1748species
1111734strain

strain history

@refhistory
1867<- ATCC <- W.E.C. Moore, VPI 0399 <- A. Prévot, 14X (Propionibacterium pentosaceum)
116013CIP <- 1987, NCIB <- ATCC <- W.E.C. Moore, Virginia Polytechnic Inst., Blacksburg, USA: strain 0179 <- 1924, A. Prévot, Inst. Pasteur, Paris, France: strain 14X <- Orla-Jensen, Propionibacterium pentosaceum

doi: 10.13145/bacdive12633.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Propionibacteriaceae
  • genus: Acidipropionibacterium
  • species: Acidipropionibacterium acidipropionici
  • full scientific name: Acidipropionibacterium acidipropionici (Orla-Jensen 1909) Scholz and Kilian 2016

  • synonyms

    • @ref: 20215
    • synonym: Propionibacterium acidipropionici

@ref: 1867

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Propionibacteriaceae

genus: Acidipropionibacterium

species: Acidipropionibacterium acidipropionici

full scientific name: Acidipropionibacterium acidipropionici (Orla-Jensen 1909) Scholz and Kilian 2016 emend. Nouioui et al. 2018

strain designation: 14X, 0179

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
116013positiverod-shapedno
125438no93
125438positive90.231
125439positive99.1

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1867PYG MEDIUM (MODIFIED) (DSMZ Medium 104)yeshttps://mediadive.dsmz.de/medium/104Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
42205MEDIUM 20 - for Anaerobic bacteriayesAgar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
116013CIP Medium 20yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20

culture temp

@refgrowthtypetemperature
1867positivegrowth37
42205positivegrowth30

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
1867anaerobe
116013facultative anaerobe

murein

  • @ref: 1867
  • murein short key: A41.01
  • type: A3gamma LL-Dpm-Gly

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838029985L-glutamate-degradation
6838016024D-mannose+fermentation
6838029016arginine-hydrolysis
6838016199urea-hydrolysis
11601317632nitrate+reduction
11601316301nitrite-reduction
683714853esculin+builds acid from
6838027897tryptophan-energy source
6838017632nitrate-reduction
6838016634raffinose+fermentation
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate+builds acid from
6837118403L-arabitol+builds acid from
6837118333D-arabitol+builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose+builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol+builds acid from
6837128087glycogen-builds acid from
6837116634raffinose-builds acid from
683716731melezitose+builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose+builds acid from
6837128053melibiose-builds acid from
6837117716lactose+builds acid from
6837117306maltose+builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol+builds acid from
6837116899D-mannitol+builds acid from
6837117268myo-inositol+builds acid from
6837116813galactitol-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol+builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose+builds acid from
6837130849L-arabinose+builds acid from
6837117108D-arabinose+builds acid from
6837117113erythritol+builds acid from
6837117754glycerol+builds acid from

metabolite production

@refChebi-IDmetaboliteproduction
6838035581indoleno
11601335581indoleno

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
116013oxidase-
116013catalase-1.11.1.6
116013urease-3.5.1.5
68380glutamyl-glutamate arylamidase-
68380proline-arylamidase+3.4.11.5
68380alkaline phosphatase+3.1.3.1
68380glutamate decarboxylase-4.1.1.15
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucyl glycin arylamidase-3.4.11.1
68380tryptophan deaminase-4.1.99.1
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase+3.2.1.55
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116013-++--+----++++-+++--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116013+++++--+-++++-+/--+++-+/-+/-+/-+/-++/-+/-++-++-+-+/--+-+----+++--

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
1867--+/-+-++/-+--++----+++--+/---+/-+/----
1867--+/-+-++/-+--++----++/-+--+/--+/-+/-+/-+/--+/-
1867--++-+++--++-+/---+++--+/--+/-++---
1867--++-+++--++-+--++++/-+/--+/-+/-+/-+/--+/-

Isolation, sampling and environmental information

isolation

  • @ref: 116013
  • sample type: Environment, soil
  • country: United States of America
  • origin.country: USA
  • continent: North America

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
18671Risk group (German classification)
1160131Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Propionibacterium acidipropionici strain CIP 103025 16S ribosomal RNA gene, partial sequence
  • accession: AY883042
  • length: 459
  • database: nuccore
  • NCBI tax ID: 1748

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acidipropionibacterium acidipropionici DSM 4900GCA_000427845scaffoldncbi1111734
66792Propionibacterium acidipropionici DSM 49001111734.3wgspatric1111734
66792Acidipropionibacterium acidipropionici DSM 49002513237117draftimg1111734

GC content

  • @ref: 1867
  • GC-content: 66.0

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes90.231no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no75.586no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no62.125yes
125438spore-formingspore-formingAbility to form endo- or exosporesno72.547no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno95.125yes
125438motile2+flagellatedAbility to perform flagellated movementno93no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno73.8
125439BacteriaNetmotilityAbility to perform movementno80.1
125439BacteriaNetgram_stainReaction to gram-stainingpositive99.1
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthfacultative anaerobe83.3

External links

@ref: 1867

culture collection no.: DSM 4900, ATCC 25562, VPI 0399, CIP 103025, NCIMB 11858

straininfo link

  • @ref: 81846
  • straininfo: 311069

literature

  • topic: Metabolism
  • Pubmed-ID: 22728152
  • title: Batch- and continuous propionic acid production from glycerol using free and immobilized cells of Propionibacterium acidipropionici.
  • authors: Dishisha T, Alvarez MT, Hatti-Kaul R
  • journal: Bioresour Technol
  • DOI: 10.1016/j.biortech.2012.05.079
  • year: 2012
  • mesh: Batch Cell Culture Techniques/*methods, Cells, Immobilized, Colony Count, Microbial, Fermentation, Glycerol/*metabolism, Kinetics, Polyethyleneimine/chemistry, Propionates/*metabolism, Propionibacterium/*cytology/*metabolism, Recycling
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1867Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4900)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4900
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
42205Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14776
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68380Automatically annotated from API rID32A
68382Automatically annotated from API zym
81846Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID311069.1StrainInfo: A central database for resolving microbial strain identifiers
116013Curators of the CIPCollection of Institut Pasteur (CIP 103025)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103025
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1