Strain identifier

BacDive ID: 12633

Type strain: Yes

Species: Acidipropionibacterium acidipropionici

Strain Designation: 14X, 0179

Strain history: CIP <- 1987, NCIB <- ATCC <- W.E.C. Moore, Virginia Polytechnic Inst., Blacksburg, USA: strain 0179 <- 1924, A. Prévot, Inst. Pasteur, Paris, France: strain 14X <- Orla-Jensen, Propionibacterium pentosaceum

NCBI tax ID(s): 1111734 (strain), 1748 (species)

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General

@ref: 1867

BacDive-ID: 12633

DSM-Number: 4900

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive, rod-shaped

description: Acidipropionibacterium acidipropionici 14X is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from Environment, soil.

NCBI tax id

NCBI tax idMatching level
1748species
1111734strain

strain history

@refhistory
1867<- ATCC <- W.E.C. Moore, VPI 0399 <- A. Prévot, 14X (Propionibacterium pentosaceum)
116013CIP <- 1987, NCIB <- ATCC <- W.E.C. Moore, Virginia Polytechnic Inst., Blacksburg, USA: strain 0179 <- 1924, A. Prévot, Inst. Pasteur, Paris, France: strain 14X <- Orla-Jensen, Propionibacterium pentosaceum

doi: 10.13145/bacdive12633.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Propionibacteriaceae
  • genus: Acidipropionibacterium
  • species: Acidipropionibacterium acidipropionici
  • full scientific name: Acidipropionibacterium acidipropionici (Orla-Jensen 1909) Scholz and Kilian 2016

  • synonyms

    • @ref: 20215
    • synonym: Propionibacterium acidipropionici

@ref: 1867

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Propionibacteriaceae

genus: Acidipropionibacterium

species: Acidipropionibacterium acidipropionici

full scientific name: Acidipropionibacterium acidipropionici (Orla-Jensen 1909) Scholz and Kilian 2016 emend. Nouioui et al. 2018

strain designation: 14X, 0179

type strain: yes

Morphology

cell morphology

  • @ref: 116013
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1867PYG MEDIUM (MODIFIED) (DSMZ Medium 104)yeshttps://mediadive.dsmz.de/medium/104Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
42205MEDIUM 20 - for Anaerobic bacteriayesAgar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
116013CIP Medium 20yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20

culture temp

@refgrowthtypetemperaturerange
1867positivegrowth37mesophilic
42205positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
1867anaerobe
116013facultative anaerobe

murein

  • @ref: 1867
  • murein short key: A41.01
  • type: A3gamma LL-Dpm-Gly

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol+builds acid from18403
68371D-arabitol+builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol+builds acid from17151
68371glycogen-builds acid from28087
68371raffinose-builds acid from16634
68371melezitose+builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371esculin+builds acid from4853
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol+builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol+builds acid from17268
68371galactitol-builds acid from16813
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol+builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose+builds acid from17108
68371erythritol+builds acid from17113
68371glycerol+builds acid from17754
116013nitrate+reduction17632
116013nitrite-reduction16301
68380urea-hydrolysis16199
68380arginine-hydrolysis29016
68380D-mannose+fermentation16024
68380raffinose+fermentation16634
68380L-glutamate-degradation29985
68380nitrate-reduction17632
68380tryptophan-energy source27897

metabolite production

@refChebi-IDmetaboliteproduction
11601335581indoleno
6838035581indoleno

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380glutamyl-glutamate arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase+3.4.11.5
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase+3.2.1.55
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
116013oxidase-
116013catalase-1.11.1.6
116013urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116013-++--+----++++-+++--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116013+++++--+-++++-+/--+++-+/-+/-+/-+/-++/-+/-++-++-+-+/--+-+----+++--

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
1867--+/-+-++/-+--++----+++--+/---+/-+/----
1867--+/-+-++/-+--++----++/-+--+/--+/-+/-+/-+/--+/-
1867--++-+++--++-+/---+++--+/--+/-++---
1867--++-+++--++-+--++++/-+/--+/-+/-+/-+/--+/-

Isolation, sampling and environmental information

isolation

  • @ref: 116013
  • sample type: Environment, soil
  • country: United States of America
  • origin.country: USA
  • continent: North America

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
18671Risk group (German classification)
1160131Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Propionibacterium acidipropionici strain CIP 103025 16S ribosomal RNA gene, partial sequence
  • accession: AY883042
  • length: 459
  • database: ena
  • NCBI tax ID: 1748

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acidipropionibacterium acidipropionici DSM 4900GCA_000427845scaffoldncbi1111734
66792Propionibacterium acidipropionici DSM 49001111734.3wgspatric1111734
66792Acidipropionibacterium acidipropionici DSM 49002513237117draftimg1111734

GC content

  • @ref: 1867
  • GC-content: 66.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno94.321no
flagellatedno98.533no
gram-positiveyes92.657no
anaerobicno57.904no
aerobicno83.169yes
halophileno95.606no
spore-formingno88.647no
glucose-utilyes91.18no
thermophileno94.283no
glucose-fermentyes67.52no

External links

@ref: 1867

culture collection no.: DSM 4900, ATCC 25562, VPI 0399, CIP 103025, NCIMB 11858

straininfo link

  • @ref: 81846
  • straininfo: 311069

literature

  • topic: Metabolism
  • Pubmed-ID: 22728152
  • title: Batch- and continuous propionic acid production from glycerol using free and immobilized cells of Propionibacterium acidipropionici.
  • authors: Dishisha T, Alvarez MT, Hatti-Kaul R
  • journal: Bioresour Technol
  • DOI: 10.1016/j.biortech.2012.05.079
  • year: 2012
  • mesh: Batch Cell Culture Techniques/*methods, Cells, Immobilized, Colony Count, Microbial, Fermentation, Glycerol/*metabolism, Kinetics, Polyethyleneimine/chemistry, Propionates/*metabolism, Propionibacterium/*cytology/*metabolism, Recycling
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1867Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4900)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4900
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
42205Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14776
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68380Automatically annotated from API rID32A
68382Automatically annotated from API zym
81846Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID311069.1StrainInfo: A central database for resolving microbial strain identifiers
116013Curators of the CIPCollection of Institut Pasteur (CIP 103025)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103025