Strain identifier

BacDive ID: 12504

Type strain: Yes

Species: Porphyromonas macacae

Strain Designation: 7728-L6C

Strain history: CCUG 47703 <-- NCTC 13100 <-- ATCC 33141 <-- J. Slots 7728-L6C.

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General

@ref: 9021

BacDive-ID: 12504

DSM-Number: 20710

keywords: human pathogen, mesophilic, anaerobe, Bacteria, 16S sequence, genome sequence

description: Porphyromonas macacae 7728-L6C is an anaerobe, mesophilic human pathogen that was isolated from periodontal pocket of stumptailed macaque .

NCBI tax id

NCBI tax idMatching level
28115species
1122974strain

strain history

doi: 10.13145/bacdive12504.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Porphyromonadaceae
  • genus: Porphyromonas
  • species: Porphyromonas macacae
  • full scientific name: Porphyromonas macacae (Slots and Genco 1980) Love 1995
  • synonyms

    @refsynonym
    20215Bacteroides salivosus
    20215Porphyromonas salivosa
    20215Bacteroides melaninogenicus subsp. macacae
    20215Bacteroides macacae

@ref: 9021

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Porphyromonadaceae

genus: Porphyromonas

species: Porphyromonas macacae

full scientific name: Porphyromonas macacae (Slots and Genco 1980) Love 1995

strain designation: 7728-L6C

type strain: yes

Morphology

colony morphology

  • @ref: 57827
  • incubation period: 2 days

Culture and growth conditions

culture medium

  • @ref: 9021
  • name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/110
  • composition: Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l NaOH Vitamin K1 Distilled water

culture temp

@refgrowthtypetemperaturerange
9021positivegrowth37mesophilic
57827positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
9021anaerobe
57827anaerobe

Isolation, sampling and environmental information

isolation

@refsample typehost species
9021periodontal pocket of stumptailed macaque (Macaca arctoides)Macaca arctoides
57827Macaque,periodontal pocket (Macaca arctoides)
67770Monkey subgingival plaque

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Primates
#Host Body-Site#Oral cavity and airways#Periodontal pocket

Safety information

risk assessment

  • @ref: 9021
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Porphyromonas macacae strain ATCC 33141 16S-23S ribosomal RNA intergenic spacer, partial sequenceAY546487875ena28115
20218Porphyromonas macacae ATCC 33141 16S ribosomal RNA gene, complete sequenceL164941473ena28115
20218Porphyromonas macacae gene for 16S ribosomal RNA, partial sequence, strain: JCM 13914AB5476651493ena28115

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Porphyromonas macacae DSM 20710 = JCM 13914 DSM 20710GCA_000379945scaffoldncbi1122974
66792Porphyromonas macacae NCTC13100GCA_900454825contigncbi28115
66792Porphyromonas macacae DSM 20710 = JCM 13914 JCM 13914GCA_000614325contigncbi1122974
66792Porphyromonas macacae DSM 207101122974.3wgspatric1122974
66792Porphyromonas macacae JCM 139141236519.3wgspatric1122974
66792Porphyromonas macacae strain NCTC1310028115.13wgspatric28115
66792Porphyromonas macacae DSM 207102517093006draftimg1122974
66792Porphyromonas macacae NCTC 131002814123385draftimg28115
66792Porphyromonas macacae JCM 139142585427889draftimg1122974
67770Porphyromonas macacae DSM 20710 = JCM 13914 strain DSM 20710, whole genome shotgun sequencing projectARBY00000000ncbi1122974
67770Porphyromonas macacae DSM 20710 = JCM 13914, whole genome shotgun sequencing projectBAKQ00000000ncbi1122974
67770Porphyromonas macacae strain NCTC13100, whole genome shotgun sequencing projectUGTI00000000ncbi28115

GC content

@refGC-contentmethod
902143.7
6777043.7thermal denaturation, midpoint method (Tm)

External links

@ref: 9021

culture collection no.: DSM 20710, ATCC 33141, CCUG 47703, NCTC 13100, JCM 13914

straininfo link

@refpassport
20218http://www.straininfo.net/strains/164237
20218http://www.straininfo.net/strains/108904

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9021Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20710)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20710
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
57827Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 47703)https://www.ccug.se/strain?id=47703
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/