Porphyromonas macacae (DSM 20710, ATCC 33141, CCUG 47703)

Name: Porphyromonas macacae (DSM 20710, ATCC 33141, CCUG 47703)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 12504

Type strain

Strain Designation 7728-L6C

Culture col. no. DSM 20710 ATCC 33141 CCUG 47703 NCTC 13100 JCM 13914 1 more

NCBI tax ID(s) 1122974 28115

Special Collections DSMZ CCUG JCM

History <- ATCC; ATCC 33141 <- J. Slots; 7728-L6C CCUG 47703 <-- NCTC 13100 <-- ATCC 33141 <-- J. Slots 7728-L6C.

Links

Porphyromonas macacae 7728-L6C is an anaerobe human pathogen that was isolated from periodontal pocket of stumptailed macaque .

anaerobe human pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 362866

ATCC 33141,DSM 20710,CCUG 47703,NCTC 13100,JCM 13914

@ref 20215

Last LPSN update 2026-02-09 11:20:51

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Porphyromonadaceae

Genus Porphyromonas

Species Porphyromonas macacae

Full scientific name Porphyromonas macacae (Slots and Genco 1980) Love 1995

Synonyms (4)

Bacteroides melaninogenicus subsp. macacae
Bacteroides macacae
Bacteroides salivosus
Porphyromonas salivosa

BacDive ID	Other strains from **Porphyromonas macacae** (1)	Type strain
150673	P. macacae CCUG 41933, ATCC 49407, NCTC 11632, JCM 15984, ...

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	93.411
125439	negative	99.8

Colony morphology

57827

Incubation period2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9021	CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
9021	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
9021	positive	growth	37
57827	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
9021	anaerobe
57827	anaerobe

Spore formation

@ref	Spore formation	Confidence
125438		94.724
125439		99.8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	+	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	+	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	+	3.4.11.2	from API rID32A
68380	alkaline phosphatase	+	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	+	3.2.1.22	from API rID32A
68380	alpha-glucosidase	-	3.2.1.20	from API rID32A
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	+		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	+	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	+	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	glycogen metabolism	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	ppGpp biosynthesis	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	adipate degradation	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	NAD metabolism	94.44	17 of 18
66794	palmitate biosynthesis	90.91	20 of 22
66794	lipid A biosynthesis	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	propanol degradation	85.71	6 of 7
66794	vitamin B1 metabolism	84.62	11 of 13
66794	pentose phosphate pathway	81.82	9 of 11
66794	vitamin B6 metabolism	81.82	9 of 11
66794	starch degradation	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	flavin biosynthesis	80	12 of 15
66794	vitamin B12 metabolism	79.41	27 of 34
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	d-mannose degradation	77.78	7 of 9
66794	butanoate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	alanine metabolism	72.41	21 of 29
66794	heme metabolism	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	photosynthesis	71.43	10 of 14
66794	threonine metabolism	70	7 of 10
66794	propionate fermentation	70	7 of 10
66794	purine metabolism	68.09	64 of 94
66794	glutamate and glutamine metabolism	67.86	19 of 28
66794	octane oxidation	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	pyrimidine metabolism	66.67	30 of 45
66794	formaldehyde oxidation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	glycolysis	64.71	11 of 17
66794	isoleucine metabolism	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	gluconeogenesis	62.5	5 of 8
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	phenylalanine metabolism	61.54	8 of 13
66794	lipoate biosynthesis	60	3 of 5
66794	methylglyoxal degradation	60	3 of 5
66794	hydrogen production	60	3 of 5
66794	aspartate and asparagine metabolism	55.56	5 of 9
66794	histidine metabolism	55.17	16 of 29
66794	phosphatidylethanolamine bioynthesis	53.85	7 of 13
66794	lipid metabolism	51.61	16 of 31
66794	coenzyme M biosynthesis	50	5 of 10
66794	suberin monomers biosynthesis	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	pantothenate biosynthesis	50	3 of 6
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	ethanol fermentation	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	lysine metabolism	50	21 of 42
66794	citric acid cycle	50	7 of 14
66794	non-pathway related	47.37	18 of 38
66794	tryptophan metabolism	47.37	18 of 38
66794	methionine metabolism	46.15	12 of 26
66794	proline metabolism	45.45	5 of 11
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	glycine betaine biosynthesis	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	oxidative phosphorylation	39.56	36 of 91
66794	polyamine pathway	39.13	9 of 23
66794	urea cycle	38.46	5 of 13
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	ketogluconate metabolism	37.5	3 of 8
66794	arginine metabolism	37.5	9 of 24
66794	tyrosine metabolism	35.71	5 of 14
66794	molybdenum cofactor biosynthesis	33.33	3 of 9
66794	UDP-GlcNAc biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	nitrate assimilation	33.33	3 of 9
66794	valine metabolism	33.33	3 of 9
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sulfate reduction	30.77	4 of 13
66794	Entner Doudoroff pathway	30	3 of 10
66794	reductive acetyl coenzyme A pathway	28.57	2 of 7
66794	ubiquinone biosynthesis	28.57	2 of 7
66794	degradation of hexoses	27.78	5 of 18
66794	cysteine metabolism	27.78	5 of 18
66794	ascorbate metabolism	27.27	6 of 22
66794	metabolism of disaccharids	27.27	3 of 11
66794	degradation of sugar alcohols	25	4 of 16
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	degradation of sugar acids	24	6 of 25
66794	leucine metabolism	23.08	3 of 13
66794	glutathione metabolism	21.43	3 of 14
66794	degradation of pentoses	21.43	6 of 28

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
9021	-	-	+	+	-	-	-	-	-	+	-	-	-	-	-	+	+	-	-	+	-	-	-	-	+	-	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Primates
#Host Body-Site	#Oral cavity and airways	#Periodontal pocket

Isolation

@ref	Sample type	Host species
9021	periodontal pocket of stumptailed macaque (Macaca arctoides)	Macaca arctoides
57827	Macaque,periodontal pocket (Macaca arctoides)
67770	Monkey subgingival plaque

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
9021			2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	53550_G01 assembly for Porphyromonas macacae NCTC13100	contig	GCA_900454825	28115.13	2814123385	28115	76.95
67770	ASM37994v1 assembly for Porphyromonas macacae DSM 20710 = JCM 13914	scaffold	GCA_000379945	1122974.3	2517093006	1122974	73.39
67770	ASM61432v1 assembly for Porphyromonas macacae DSM 20710 = JCM 13914	contig	GCA_000614325	1236519.3	2585427889	1122974	51.17

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Porphyromonas macacae strain ATCC 33141 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY546487	875	28115
20218	Porphyromonas macacae ATCC 33141 16S ribosomal RNA gene, complete sequence	L16494	1473	28115
20218	Porphyromonas macacae gene for 16S ribosomal RNA, partial sequence, strain: JCM 13914	AB547665	1493	28115

GC content

@ref	GC-content (mol%)	Method
9021	43.7
67770	43.7	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Porphyromonas macacae DSM 20710 = JCM 13914
NCBI: GCA_000379945

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	79.80	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	motility	BacteriaNetⓘ	no	73.20	no
125439	spore_formation	BacteriaNetⓘ	no	99.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Porphyromonas macacae DSM 20710
PATRIC: 1122974.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	93.41	no
125438	anaerobic	anaerobicⓘ	yes	88.12	no
125438	spore-forming	spore-formingⓘ	no	94.72	no
125438	aerobic	aerobicⓘ	no	92.83	no
125438	thermophilic	thermophileⓘ	no	92.79	no
125438	flagellated	motile2+ⓘ	no	88.57	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	In vitro effectiveness of pomegranate extract present in pet oral hygiene products against canine oral bacterial species.	Stephen AS, Nicolas CS, Lloret F, Allaker RP.	Vet World	10.14202/vetworld.2022.1714-1718	2022
	Erythritol inhibits the growth of periodontal-disease-associated bacteria isolated from canine oral cavity.	Shimizu M, Miyawaki S, Kuroda T, Umeta M, Kawabe M, Watanabe K.	Heliyon	10.1016/j.heliyon.2022.e10224	2022
Enzymology	Detection of Porphyromonas gingivalis from saliva by PCR by using a simple sample-processing method.	Matto J, Saarela M, Alaluusua S, Oja V, Jousimies-Somer H, Asikainen S.	J Clin Microbiol	10.1128/jcm.36.1.157-160.1998	1998
Phylogeny	Culture-independent identification of periodontitis-associated Porphyromonas and Tannerella populations by targeted molecular analysis.	de Lillo A, Booth V, Kyriacou L, Weightman AJ, Wade WG.	J Clin Microbiol	10.1128/jcm.42.12.5523-5527.2004	2004
Phylogeny	Porphyromonas somerae sp. nov., a pathogen isolated from humans and distinct from porphyromonas levii.	Summanen PH, Durmaz B, Vaisanen ML, Liu C, Molitoris D, Eerola E, Helander IM, Finegold SM.	J Clin Microbiol	10.1128/jcm.43.9.4455-4459.2005	2005

References

#9021	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20710
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#57827	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47703
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68380	Automatically annotated from API rID32A .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Porphyromonas macacae (DSM 20710, ATCC 33141, CCUG 47703)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900454825

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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