Strain identifier
BacDive ID: 12037
Type strain: 
Species: Polyangium sorediatum
Strain Designation: Pl s12
Strain history: DSM 14670 <-- H. Reichenbach Pl s12.
NCBI tax ID(s): 889274 (species)
version 8.1 (current version)
General
@ref: 5474
BacDive-ID: 12037
DSM-Number: 14670
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Polyangium sorediatum Pl s12 is a mesophilic, Gram-negative bacterium that builds a fruiting body and was isolated from soil with decaying plant material.
NCBI tax id
- NCBI tax id: 889274
- Matching level: species
strain history
| @ref | history |
|---|---|
| 5474 | <- H. Reichenbach; Pl s12 |
| 67770 | DSM 14670 <-- H. Reichenbach Pl s12. |
doi: 10.13145/bacdive12037.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Myxococcales
- family: Polyangiaceae
- genus: Polyangium
- species: Polyangium sorediatum
- full scientific name: Polyangium sorediatum (ex Thaxter 1904) Brockman 1989
@ref: 5474
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Myxococcales
family: Polyangiaceae
genus: Polyangium
species: Polyangium sorediatum
full scientific name: Polyangium sorediatum (ex Thaxter 1904) Brockman 1989
strain designation: Pl s12
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.588
multicellular morphology
- @ref: 18281
- forms multicellular complex: yes
- complex name: fruiting body
multimedia
- @ref: 5474
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_14670.jpg
- caption: sporangioles consisting of myxospores in agar medium 9
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 5474
- name: VY/2 AGAR (DSMZ Medium 9)
- growth: yes
- link: https://mediadive.dsmz.de/medium/9
- composition: Name: VY/2 AGAR (DSMZ Medium 9; with strain-specific modifications) Composition: Agar 15.0 g/l Yeast 7.5 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 5474 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.815
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 5474 | soil with decaying plant material | San Diego | USA | USA | North America |
| 67770 | Soil with plant residues | CA | USA | USA | North America |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Decomposing plant |
Safety information
risk assessment
- @ref: 5474
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5474
- description: Polyangium sorediatum strain Pl s12 16S ribosomal RNA gene, complete sequence
- accession: GU207880
- length: 1552
- database: ena
- NCBI tax ID: 889274
Genome sequences
- @ref: 66792
- description: Polyangium sorediatum strain DSM 14670
- accession: 889274.3
- assembly level: wgs
- database: patric
- NCBI tax ID: 889274
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 77 | no |
| motile | no | 85.851 | no |
| flagellated | no | 94.694 | no |
| gram-positive | no | 95.158 | no |
| anaerobic | no | 96.989 | no |
| halophile | no | 90.787 | no |
| spore-forming | no | 76.189 | no |
| thermophile | no | 98.211 | yes |
| glucose-util | yes | 77.21 | no |
| aerobic | yes | 75.104 | no |
| glucose-ferment | no | 90.235 | no |
External links
@ref: 5474
culture collection no.: DSM 14670, JCM 12637
straininfo link
- @ref: 81256
- straininfo: 358912
literature
- topic: Phylogeny
- Pubmed-ID: 24187023
- title: Designation of type strains for seven species of the order Myxococcales and proposal for neotype strains of Cystobacter ferrugineus, Cystobacter minus and Polyangium fumosum.
- authors: Lang E, Reichenbach H
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.056440-0
- year: 2013
- mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, Myxococcales/*classification/cytology/genetics, *Phylogeny, Sequence Analysis, DNA
- topic2: Transcriptome
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5474 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14670) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14670 | |
| 18281 | Reichenbach, H. | Collection description and documentation of myxobacteria by H. Reichenbach, HZI (formerly GBF); Collection curr. located at the DSMZ | ||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 81256 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID358912.1 | StrainInfo: A central database for resolving microbial strain identifiers |