Archive BacDiveID:10.13145/bacdive12037.20240916.9.1

Strain identifier

BacDive ID: 12037

Type strain:

Species: Polyangium sorediatum

Strain Designation: Pl s12

Strain history: DSM 14670 <-- H. Reichenbach Pl s12.

NCBI tax ID(s): 889274 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 5474

BacDive-ID: 12037

DSM-Number: 14670

keywords: genome sequence, 16S sequence, Bacteria, Gram-negative

description: Polyangium sorediatum Pl s12 is a Gram-negative bacterium that builds a fruiting body and was isolated from soil with decaying plant material.

NCBI tax id

NCBI tax id: 889274
Matching level: species

strain history

@ref	history
5474	<- H. Reichenbach; Pl s12
67770	DSM 14670 <-- H. Reichenbach Pl s12.

doi: 10.13145/bacdive12037.20240916.9.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Deltaproteobacteria
order: Myxococcales
family: Polyangiaceae
genus: Polyangium
species: Polyangium sorediatum
full scientific name: Polyangium sorediatum (ex Thaxter 1904) Brockman 1989

@ref: 5474

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Myxococcales

family: Polyangiaceae

genus: Polyangium

species: Polyangium sorediatum

full scientific name: Polyangium sorediatum (ex Thaxter 1904) Brockman 1989

strain designation: Pl s12

type strain: yes

Morphology

multicellular morphology

@ref: 18281
forms multicellular complex: yes
complex name: fruiting body

multimedia

@ref: 5474
multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_14670.jpg
caption: sporangioles consisting of myxospores in agar medium 9
intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@ref: 5474
name: VY/2 AGAR (DSMZ Medium 9)
growth: yes
link: https://mediadive.dsmz.de/medium/9
composition: Name: VY/2 AGAR (DSMZ Medium 9; with strain-specific modifications) Composition: Agar 15.0 g/l Yeast 7.5 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water

culture temp

@ref	growth	type	temperature
5474	positive	growth	30
67770	positive	growth	30

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent
5474	soil with decaying plant material	San Diego	USA	USA	North America
67770	Soil with plant residues	CA	USA	USA	North America

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Decomposing plant

Safety information

risk assessment

@ref: 5474
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 5474
description: Polyangium sorediatum strain Pl s12 16S ribosomal RNA gene, complete sequence
accession: GU207880
length: 1552
database: nuccore
NCBI tax ID: 889274

Genome sequences

@ref: 66792
description: Polyangium sorediatum strain DSM 14670
accession: 889274.3
assembly level: wgs
database: patric
NCBI tax ID: 889274

Genome-based predictions

predictions

@ref	trait	model	description	prediction	confidence	training_data
69481	spore-forming	spore-forming	Ability to form endo- or exospores	yes	77	no
69480	gram-positive	gram-positive	Positive reaction to Gram-staining	no	85.482	no
69480	anaerobic	anaerobic	Ability to grow under anoxygenic conditions (including facultative anaerobes)	no	81.524	no
69480	aerobic	aerobic	Ability to grow under oxygenic conditions (including facultative aerobes)	yes	79.027	no
69480	spore-forming	spore-forming	Ability to form endo- or exospores	no	73.344	no
69480	thermophilic	thermophile	Ability to grow at temperatures above or equal to 45°C	no	93.912	yes
69480	flagellated	motile2+	Ability to perform flagellated movement	no	58.213	no

External links

@ref: 5474

culture collection no.: DSM 14670, JCM 12637

straininfo link

@ref: 81256
straininfo: 358912

literature

topic: Phylogeny
Pubmed-ID: 24187023
title: Designation of type strains for seven species of the order Myxococcales and proposal for neotype strains of Cystobacter ferrugineus, Cystobacter minus and Polyangium fumosum.
authors: Lang E, Reichenbach H
journal: Int J Syst Evol Microbiol
DOI: 10.1099/ijs.0.056440-0
year: 2013
mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, Myxococcales/*classification/cytology/genetics, *Phylogeny, Sequence Analysis, DNA
topic2: Transcriptome

Reference

@id	authors	catalogue	doi/url	title
5474	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14670)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-14670
18281	Reichenbach, H.			Collection description and documentation of myxobacteria by H. Reichenbach, HZI (formerly GBF); Collection curr. located at the DSMZ
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481	Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch		10.21203/rs.3.rs-2527258/v1	Predictions based on the model GenomeNet Sporulation v. 1
81256	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID358912.1	StrainInfo: A central database for resolving microbial strain identifiers