Strain identifier

BacDive ID: 11996

Type strain: Yes

Species: Sporosarcina koreensis

Strain Designation: F73

Strain history: CIP <- 2008, DSMZ <- B.Y. Kim <- S.W. Kwon, KACC, Suwon, South Korea: strain F73

NCBI tax ID(s): 334735 (species)

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General

@ref: 6643

BacDive-ID: 11996

DSM-Number: 16921

keywords: 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive, motile, rod-shaped

description: Sporosarcina koreensis F73 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 334735
  • Matching level: species

strain history

@refhistory
6643<- Byung-Yong Kim <- Soon-Wo Kwon, strain F/73
67770KACC 11299 <-- S.-W. Kwon F73.
120488CIP <- 2008, DSMZ <- B.Y. Kim <- S.W. Kwon, KACC, Suwon, South Korea: strain F73

doi: 10.13145/bacdive11996.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Sporosarcina
  • species: Sporosarcina koreensis
  • full scientific name: Sporosarcina koreensis Kwon et al. 2007

@ref: 6643

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Caryophanaceae

genus: Sporosarcina

species: Sporosarcina koreensis

full scientific name: Sporosarcina koreensis Kwon et al. 2007

strain designation: F73

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
31812positive2.8 µm0.6 µmrod-shapedyes
120488positiverod-shapedyes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6643CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
37854MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
120488CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
6643positivegrowth30
31812positivegrowth15-40
31812positiveoptimum30
37854positivegrowth30
67770positivegrowth30

culture pH

@refabilitytypepHPH range
31812positivegrowth6.0-9.0alkaliphile
31812positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31812aerobe
120488obligate aerobe

spore formation

  • @ref: 31812
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
31812NaClpositivegrowth0.0-7.0 %
31812NaClpositiveoptimum3.5 %

murein

  • @ref: 6643
  • murein short key: A11.33
  • type: A4alpha L-Lys-D-Glu

observation

  • @ref: 67770
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3181216947citrate-carbon source
3181217272propionate-carbon source
12048817632nitrate-reduction
12048816301nitrite-reduction

metabolite production

  • @ref: 120488
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
31812catalase+1.11.1.6
31812gelatinase+
31812cytochrome oxidase+1.9.3.1
31812urease+3.5.1.5
120488oxidase+
120488catalase+1.11.1.6
120488urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120488-++--++-+++---------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6643soilSuwonRepublic of KoreaKORAsia
67770Upland soil in SuwonRepublic of KoreaKORAsia
120488Environment, SoilSuwonRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
66431Risk group (German classification)
1204881Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
6643Sporosarcina koreensis strain F73 16S ribosomal RNA gene, partial sequenceDQ0733931498nuccore334735
124043Sporosarcina koreensis gene for 16S rRNA, partial sequence, strain: NBRC 106531.AB6824521477nuccore334735

GC content

@refGC-contentmethod
664346.5
6777044.5high performance liquid chromatography (HPLC)

External links

@ref: 6643

culture collection no.: DSM 16921, CIP 109817, KACC 11299, JCM 16400, NBRC 106531

straininfo link

  • @ref: 81211
  • straininfo: 309504

literature

  • topic: Phylogeny
  • Pubmed-ID: 17684239
  • title: Sporosarcina koreensis sp. nov. and Sporosarcina soli sp. nov., isolated from soil in Korea.
  • authors: Kwon SW, Kim BY, Song J, Weon HY, Schumann P, Tindall BJ, Stackebrandt E, Fritze D
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.64352-0
  • year: 2007
  • mesh: Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Gram-Positive Endospore-Forming Rods/*classification/genetics/*isolation & purification, Korea, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
6643Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16921)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16921
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31812Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2808028776041
37854Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7602
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
81211Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID309504.1StrainInfo: A central database for resolving microbial strain identifiers
120488Curators of the CIPCollection of Institut Pasteur (CIP 109817)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109817
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy