Strain identifier
BacDive ID: 11817
Type strain: 
Species: Desulfallas thermosapovorans
Strain Designation: MLF
Strain history: <- J.-L. Garcia, Université de Provence, Marseille, France; MLF <- M.-L. Fardeau {1991}
NCBI tax ID(s): 1121431 (strain), 58137 (species)
version 9.1 (current version)
General
@ref: 2730
BacDive-ID: 11817
DSM-Number: 6562
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming
description: Desulfallas thermosapovorans MLF is an anaerobe, spore-forming bacterium that was isolated from rice hulls and peanut shells compost.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 58137 | species |
| 1121431 | strain |
strain history
- @ref: 2730
- history: <- J.-L. Garcia, Université de Provence, Marseille, France; MLF <- M.-L. Fardeau {1991}
doi: 10.13145/bacdive11817.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Peptococcaceae
- genus: Desulfallas
- species: Desulfallas thermosapovorans
- full scientific name: Desulfallas thermosapovorans (Fardeau et al. 1995) Watanabe et al. 2018
synonyms
- @ref: 20215
- synonym: Desulfotomaculum thermosapovorans
@ref: 2730
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Peptococcaceae
genus: Desulfallas
species: Desulfallas thermosapovorans
full scientific name: Desulfallas thermosapovorans (Fardeau et al. 1995) Watanabe et al. 2018
strain designation: MLF
type strain: yes
Culture and growth conditions
culture medium
- @ref: 2730
- name: DESULFALLAS THERMOSAPOVORANS MEDIUM (DSMZ Medium 667)
- growth: yes
- link: https://mediadive.dsmz.de/medium/667
- composition: Name: DESULFALLAS THERMOSAPOVORANS MEDIUM (DSMZ Medium 667) Composition: NaCl 7.92079 g/l Na2SO4 2.9703 g/l Na-butyrate 2.17822 g/l Na2CO3 1.48515 g/l NH4Cl 0.9901 g/l KCl 0.49505 g/l Na-acetate 0.49505 g/l Yeast extract 0.39604 g/l MgCl2 x 6 H2O 0.39604 g/l KH2PO4 0.19802 g/l Na2S x 9 H2O 0.19802 g/l CaCl2 x 2 H2O 0.148514 g/l Na2S2O4 0.049505 g/l NaHCO3 0.049505 g/l HCl 0.00371287 g/l FeCl2 x 4 H2O 0.00222772 g/l Sodium resazurin 0.00049505 g/l NaOH 0.00049505 g/l CoCl2 x 6 H2O 0.000282178 g/l MnCl2 x 4 H2O 0.000148515 g/l ZnCl2 0.00010396 g/l Pyridoxine hydrochloride 9.90099e-05 g/l Na2MoO4 x 2 H2O 5.34653e-05 g/l (DL)-alpha-Lipoic acid 4.95049e-05 g/l Riboflavin 4.95049e-05 g/l Nicotinic acid 4.95049e-05 g/l Calcium D-(+)-pantothenate 4.95049e-05 g/l p-Aminobenzoic acid 4.95049e-05 g/l Thiamine HCl 4.95049e-05 g/l NiCl2 x 6 H2O 3.56436e-05 g/l Biotin 1.9802e-05 g/l Folic acid 1.9802e-05 g/l H3BO3 8.91089e-06 g/l Na2WO4 x 2 H2O 3.9604e-06 g/l CuCl2 x 2 H2O 2.9703e-06 g/l Na2SeO3 x 5 H2O 2.9703e-06 g/l Vitamin B12 9.90099e-07 g/l Distilled water
culture temp
- @ref: 2730
- growth: positive
- type: growth
- temperature: 50
Physiology and metabolism
oxygen tolerance
- @ref: 2730
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 2730
- sample type: rice hulls and peanut shells compost
- geographic location: Africa, country of origin unknown
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Biodegradation | #Composting |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
taxonmaps
- @ref: 69479
- File name: preview.99_176995.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_377;96_11440;97_66614;98_115632;99_176995&stattab=map
- Last taxonomy: Desulfallas thermosapovorans subclade
- 16S sequence: Y11575
- Sequence Identity:
- Total samples: 40
- soil counts: 15
- aquatic counts: 15
- animal counts: 1
- plant counts: 9
Safety information
risk assessment
- @ref: 2730
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | D.thermosapovorans 16S rRNA gene | Y11575 | 1450 | nuccore | 58137 |
| 2730 | Desulfotomaculum thermosapovorans ribosomal RNA | Z26315 | 1528 | nuccore | 1121431 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Desulfallas thermosapovorans DSM 6562 | GCA_008124625 | contig | ncbi | 1121431 |
| 66792 | Desulfallas thermosapovorans DSM 6562 | 1121431.3 | wgs | patric | 1121431 |
| 66792 | Desulfallas thermosapovorans DSM 6562 | 2599185175 | draft | img | 1121431 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 2730 | 51.2 | Buoyant density centrifugation (BD) |
| 2730 | 63.5 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 88 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 62.572 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 87.001 | yes |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 81.913 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 89.401 | yes |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | yes | 68.922 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 68.335 | no |
External links
@ref: 2730
culture collection no.: DSM 6562, NBRC 112758
straininfo link
- @ref: 81035
- straininfo: 48236
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2730 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6562) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6562 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 81035 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48236.1 | StrainInfo: A central database for resolving microbial strain identifiers |