Strain identifier

BacDive ID: 11787

Type strain: Yes

Species: Thermincola carboxydiphila

Strain Designation: 2204

Strain history: <- T. G. Sokolova, Russian Academy of Sciences, Inst. of Microbiology, Moscow, Russia; 2204 <- T. G. Sokolova {1997}

NCBI tax ID(s): 278994 (species)

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General

@ref: 6776

BacDive-ID: 11787

DSM-Number: 17129

keywords: 16S sequence, Bacteria, anaerobe, thermophilic, Gram-positive, motile, rod-shaped

description: Thermincola carboxydiphila 2204 is an anaerobe, thermophilic, Gram-positive bacterium that was isolated from hot spring.

NCBI tax id

  • NCBI tax id: 278994
  • Matching level: species

strain history

  • @ref: 6776
  • history: <- T. G. Sokolova, Russian Academy of Sciences, Inst. of Microbiology, Moscow, Russia; 2204 <- T. G. Sokolova {1997}

doi: 10.13145/bacdive11787.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Peptococcaceae
  • genus: Thermincola
  • species: Thermincola carboxydiphila
  • full scientific name: Thermincola carboxydiphila Sokolova et al. 2005

@ref: 6776

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Peptococcaceae

genus: Thermincola

species: Thermincola carboxydiphila

full scientific name: Thermincola carboxydiphila Sokolova et al. 2005

strain designation: 2204

type strain: yes

Morphology

cell morphology

  • @ref: 31320
  • gram stain: positive
  • cell length: 1.8 µm
  • cell width: 0.5 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 31320
  • production: no

Culture and growth conditions

culture medium

  • @ref: 6776
  • name: THERMINCOLA MEDIUM (CO) (DSMZ Medium 1028)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1028
  • composition: Name: THERMINCOLA MEDIUM (CO) (DSMZ Medium 1028) Composition: Na2S x 9 H2O 0.997009 g/l NH4Cl 0.997009 g/l KH2PO4 0.498504 g/l NaHCO3 0.498504 g/l Na2CO3 0.498504 g/l MgCl2 x 6 H2O 0.329013 g/l KCl 0.329013 g/l Na-acetate 0.199402 g/l Yeast extract 0.199402 g/l MgSO4 x 7 H2O 0.0299103 g/l NaCl 0.00997009 g/l MnSO4 x H2O 0.00498504 g/l (NH4)2Ni(SO4)2 x 6 H2O 0.00279163 g/l ZnSO4 x 7 H2O 0.00179462 g/l CoCl2 x 6 H2O 0.00179462 g/l FeSO4 x 7 H2O 0.000997009 g/l CaCl2 x 2 H2O 0.000997009 g/l Sodium resazurin 0.000498504 g/l Pyridoxine hydrochloride 0.000199402 g/l AlK(SO4)2 x 12 H2O 0.000179462 g/l CuSO4 x 5 H2O 9.97009e-05 g/l H3BO3 9.97009e-05 g/l p-Aminobenzoic acid 9.97009e-05 g/l Calcium D-(+)-pantothenate 9.97009e-05 g/l Nicotinic acid 9.97009e-05 g/l Riboflavin 9.97009e-05 g/l Thiamine HCl 9.97009e-05 g/l Na2SeO4 9.97009e-05 g/l Na2WO4 x 2 H2O 9.97009e-05 g/l Na2MoO4 x 2 H2O 9.97009e-05 g/l (DL)-alpha-Lipoic acid 9.97009e-05 g/l Folic acid 3.98804e-05 g/l Biotin 3.98804e-05 g/l Vitamin B12 1.99402e-06 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
6776positivegrowth55thermophilic
31320positivegrowth37-68
31320positiveoptimum55thermophilic

culture pH

@refabilitytypepHPH range
31320positivegrowth6.7-9.5alkaliphile
31320positiveoptimum8

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
6776anaerobe
31320anaerobe

spore formation

  • @ref: 31320
  • spore formation: no

observation

  • @ref: 31320
  • observation: aggregates in clumps

Isolation, sampling and environmental information

isolation

  • @ref: 6776
  • sample type: hot spring
  • geographic location: Baikal Lake region
  • country: Russia
  • origin.country: RUS
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Thermal spring
#Condition#Thermophilic (>45°C)

taxonmaps

  • @ref: 69479
  • File name: preview.99_4701.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_485;96_2334;97_2837;98_3525;99_4701&stattab=map
  • Last taxonomy: Thermincola potens
  • 16S sequence: AY603000
  • Sequence Identity:
  • Total samples: 3326
  • soil counts: 693
  • aquatic counts: 618
  • animal counts: 1851
  • plant counts: 164

Safety information

risk assessment

  • @ref: 6776
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6776
  • description: Thermincola carboxydiphila strain 2204 16S ribosomal RNA gene, partial sequence
  • accession: AY603000
  • length: 1482
  • database: ena
  • NCBI tax ID: 278994

GC content

@refGC-content
677645.4
3132045

External links

@ref: 6776

culture collection no.: DSM 17129, JCM 13258, VKM B-2283

straininfo link

  • @ref: 81005
  • straininfo: 265634

literature

  • topic: Phylogeny
  • Pubmed-ID: 16166711
  • title: Thermincola carboxydiphila gen. nov., sp. nov., a novel anaerobic, carboxydotrophic, hydrogenogenic bacterium from a hot spring of the Lake Baikal area.
  • authors: Sokolova TG, Kostrikina NA, Chernyh NA, Kolganova TV, Tourova TP, Bonch-Osmolovskaya EA
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.63299-0
  • year: 2005
  • mesh: Anti-Bacterial Agents/pharmacology, Bacteria, Anaerobic/classification/genetics/isolation & purification/physiology, Carbon Monoxide/*metabolism, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Hot Springs/*microbiology, Hot Temperature, Hydrogen/*metabolism, Hydrogen-Ion Concentration, Microbial Sensitivity Tests/methods, Molecular Sequence Data, Oxidation-Reduction, Peptococcaceae/*classification/genetics/isolation & purification/physiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, Species Specificity
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
6776Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17129)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17129
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31320Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2763528776041
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
81005Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID265634.1StrainInfo: A central database for resolving microbial strain identifiers