Strain identifier

BacDive ID: 11770

Type strain: Yes

Species: Desulfitobacterium chlororespirans

Strain Designation: Co23

Strain history: <- F. E. Löffler, Co23

NCBI tax ID(s): 1121395 (strain), 51616 (species)

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General

@ref: 4410

BacDive-ID: 11770

DSM-Number: 11544

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, motile

description: Desulfitobacterium chlororespirans Co23 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from compost soil.

NCBI tax id

NCBI tax idMatching level
1121395strain
51616species

strain history

  • @ref: 4410
  • history: <- F. E. Löffler, Co23

doi: 10.13145/bacdive11770.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Desulfitobacteriaceae
  • genus: Desulfitobacterium
  • species: Desulfitobacterium chlororespirans
  • full scientific name: Desulfitobacterium chlororespirans Sanford et al. 2001

@ref: 4410

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Peptococcaceae

genus: Desulfitobacterium

species: Desulfitobacterium chlororespirans

full scientific name: Desulfitobacterium chlororespirans Sanford et al. 2001

strain designation: Co23

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes94.447
69480100positive

Culture and growth conditions

culture medium

  • @ref: 4410
  • name: DESULFITOBACTERIUM HAFNIENSE MEDIUM (DSMZ Medium 720)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/720
  • composition: Name: DESULFITOBACTERIUM HAFNIENSE MEDIUM (DSMZ Medium 720) Composition: NaHCO3 2.59222 g/l Na-pyruvate 2.49252 g/l Na2S2O3 x 5 H2O 1.24626 g/l NH4Cl 0.997009 g/l Yeast extract 0.997009 g/l K2HPO4 x 3 H2O 0.398804 g/l Na2S x 9 H2O 0.299103 g/l MgCl2 x 6 H2O 0.0997009 g/l NaCl 0.0997009 g/l CaCl2 x 2 H2O 0.0498504 g/l Na2-EDTA x 2 H2O 0.00518445 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Thiamine HCl 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

culture temp

  • @ref: 4410
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
4410anaerobe
69480anaerobe96.168

spore formation

@refspore formationconfidence
69481yes99
69480yes100

Isolation, sampling and environmental information

isolation

  • @ref: 4410
  • sample type: compost soil
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Engineered#Biodegradation#Composting
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 4410
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 4410
  • description: Desulfitobacterium chlororespirans 16S ribosomal RNA gene, partial sequence
  • accession: U68528
  • length: 1507
  • database: ena
  • NCBI tax ID: 51616

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Desulfitobacterium chlororespirans DSM 11544GCA_900143285scaffoldncbi1121395
66792Desulfitobacterium chlororespirans DSM 115441121395.3wgspatric1121395
66792Desulfitobacterium chlororespirans DSM 115442582580732draftimg1121395

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes99no
motileyes85.25no
flagellatedno71.665no
gram-positiveno77.641no
anaerobicyes97.99yes
aerobicno93.522yes
halophileno95.39no
spore-formingyes95.189no
thermophileno99.677yes
glucose-utilyes54.163no
glucose-fermentno77.767no

External links

@ref: 4410

culture collection no.: DSM 11544, ATCC 700175

straininfo link

  • @ref: 80988
  • straininfo: 43808

Reference

@idauthorscataloguedoi/urltitle
4410Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11544)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11544
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
80988Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID43808.1StrainInfo: A central database for resolving microbial strain identifiers