Strain identifier

BacDive ID: 11738

Type strain: Yes

Species: Pasteurella multocida subsp. septica

Strain Designation: Souchard

Strain history: CIP <- 1952, G. Girard, Inst. Pasteur, Paris, France: strain Souchard

NCBI tax ID(s): 115545 (subspecies)

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General

@ref: 16689

BacDive-ID: 11738

DSM-Number: 23071

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative

description: Pasteurella multocida subsp. septica Souchard is an aerobe, Gram-negative bacterium that was isolated from human abscess .

NCBI tax id

  • NCBI tax id: 115545
  • Matching level: subspecies

strain history

@refhistory
16689<- CCUG <- M. Bisgaard, Langa, Denmark
381251952, G. Girard, Inst. Pasteur, Paris, France: strain Souchard
121180CIP <- 1952, G. Girard, Inst. Pasteur, Paris, France: strain Souchard

doi: 10.13145/bacdive11738.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Pasteurella
  • species: Pasteurella multocida subsp. septica
  • full scientific name: Pasteurella multocida subsp. septica Mutters et al. 1985

@ref: 16689

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Pasteurella

species: Pasteurella multocida subsp. septica

full scientific name: Pasteurella multocida subsp. septica Mutters et al. 1985

strain designation: Souchard

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
121180negativerod-shapedno
69480no92.658
69480negative98.604

colony morphology

  • @ref: 121180
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16689COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
38125MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicolayesDistilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g)
121180CIP Medium 118-byeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=118-b

culture temp

@refgrowthtypetemperature
16689positivegrowth37
38125positivegrowth37
46725positivegrowth37
121180positivegrowth15-45

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
46725aerobe
121180facultative anaerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 92.539

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 2-ketogluconate-builds acid from
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose+builds acid from62318
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
121180esculin-hydrolysis4853
121180nitrate+reduction17632
121180nitrite-reduction16301
121180glucose+/-degradation17234
121180nitrate+respiration17632
68377D-glucose+builds acid from17634
68377sucrose+builds acid from17992
68381arginine-hydrolysis29016
68381D-ribose-builds acid from16988
68381D-mannitol-builds acid from16899
68381sorbitol-builds acid from30911
68381lactose-builds acid from17716
68381trehalose+builds acid from27082
68381raffinose-builds acid from16634
68381sucrose+builds acid from17992
68381L-arabinose-builds acid from30849
68381D-arabitol-builds acid from18333
68381alpha-cyclodextrin-builds acid from40585
68381hippurate-hydrolysis606565
68381glycogen-builds acid from28087
68381pullulan-builds acid from27941
68381maltose-builds acid from17306
68381melibiose-builds acid from28053
68381melezitose-builds acid from6731
68381methyl beta-D-glucopyranoside-builds acid from320055
68381D-tagatose-builds acid from16443
68381urea-hydrolysis16199

antibiotic resistance

  • @ref: 121180
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
12118035581indoleyes
6838115688acetoinno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
6838115688acetoin-
12118015688acetoin+

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase-
68381alkaline phosphatase+3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23
68377lipase+
121180oxidase+
121180beta-galactosidase-3.2.1.23
121180alcohol dehydrogenase-1.1.1.1
121180catalase+1.11.1.6
121180lysine decarboxylase-4.1.1.18
121180ornithine decarboxylase+4.1.1.17
121180urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121180-+++-+----++---+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
121180+/----++---++++----+---+-----+/---++-------+/-+--+/---+/--+/-

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
16689++-++-++---+-
16689-++-++-++---+

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
46725-----+----+-+-------------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
121180+++++--+-----------+-+-----------+-----+---------+----+----+---------------+----+-----+------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentisolation date
16689human abscess (cat bite)FranceFRAEurope
46725Human abscess,cat biteFranceFRAEurope
121180Human, Abscess after cat biteFranceFRAEurope1952

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Other#Abscess

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
166892Risk group (German classification)
1211802Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Pasteurella multocida subsp. septica strain PM24 16S ribosomal RNA gene, partial sequenceAY0790001468nuccore115545
16689Pasteurella multocida subsp. septica strain CCUG 17977 16S ribosomal RNA gene, partial sequenceAF2944111364nuccore115545

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pasteurella multocida subsp. septica NCTC11995GCA_900454845contigncbi115545
66792Pasteurella multocida subsp. septica strain NCTC11995115545.23wgspatric115545
66792Pasteurella multocida septica NCTC 119952869029176draftimg747

GC content

  • @ref: 16689
  • GC-content: 41.5

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingno98.604no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no96.382yes
69480spore-formingspore-formingAbility to form endo- or exosporesno92.539no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no82.49no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno98yes
69480flagellatedmotile2+Ability to perform flagellated movementno92.658no

External links

@ref: 16689

culture collection no.: DSM 23071, ATCC 51687, CCM 4731, CCUG 17977, CIP A125, NCTC 11995

straininfo link

  • @ref: 80957
  • straininfo: 69705

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16689Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23071)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23071
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38125Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/9764
46725Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 17977)https://www.ccug.se/strain?id=17977
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68377Automatically annotated from API NH
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
80957Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID69705.1StrainInfo: A central database for resolving microbial strain identifiers
121180Curators of the CIPCollection of Institut Pasteur (CIP A125)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20A125