Strain identifier

BacDive ID: 11711

Type strain: Yes

Species: Haemophilus aegyptius

Strain Designation: 180-a, 180a

Strain history: CIP <- 1952, M. Pittman, N.I.H.: strain 180a

NCBI tax ID(s): 888728 (strain), 197575 (species)

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General

@ref: 15433

BacDive-ID: 11711

DSM-Number: 21187

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative

description: Haemophilus aegyptius 180-a is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from human conjunctiva.

NCBI tax id

NCBI tax idMatching level
197575species
888728strain

strain history

@refhistory
15433<- CCUG; strain 180-a {2008} <- NCTC <- M. Pittman
377371952, M. Pittman, N.I.H.: strain 180a
116054CIP <- 1952, M. Pittman, N.I.H.: strain 180a

doi: 10.13145/bacdive11711.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Haemophilus
  • species: Haemophilus aegyptius
  • full scientific name: Haemophilus aegyptius corrig. (Trevisan 1889) Pittman and Davis 1950 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Bacillus aegyptius
    20215Hemophilus aegyptius

@ref: 15433

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Haemophilus

species: Haemophilus aegyptius

full scientific name: Haemophilus aegyptius (Trevisan 1889) Pittman and Davis 1950

strain designation: 180-a, 180a

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.983

multimedia

@refmultimedia contentcaptionintellectual property rights
66793EM_DSM_21187_1.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_21187_2.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_21187_3.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_21187_4.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_21187_5.jpgelectron microscopic image© HZI/Manfred Rohde

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15433HAEMOPHILUS MEDIUM (DSMZ Medium 804)yeshttps://mediadive.dsmz.de/medium/804Name: HAEMOPHILUS MEDIUM (DSMZ Medium 804) Composition: Mueller-Hinton broth 21.0 g/l Yeast extract 5.0 g/l Distilled water
37737MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and NeisseriayesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml)
116054CIP Medium 10yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=10

culture temp

@refgrowthtypetemperaturerange
15433positivegrowth37mesophilic
37737positivegrowth37mesophilic
48252positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
15433microaerophile
48252aerobe
48252microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.994

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837717306maltose-builds acid from
6837717992sucrose-builds acid from
6837727897tryptophan-energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23
68377beta-lactamase-3.5.2.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    48252C12:00.412
    48252C14:029.814
    48252C16:031.216
    48252C18:00.818
    48252C12:0 ALDE ?210.915
    48252C13:0 ISO 2OH0.613.814
    48252C14:0 3OH/C16:1 ISO I5.515.485
    48252C16:1 ω5c0.315.908
    48252C16:1 ω7c25.715.819
    48252C18:1 ω9c1.217.769
    48252C18:2 ω6,9c/C18:0 ANTE1.517.724
    48252Unidentified0.513.947
    48252Unidentified0.215.174
    48252unknown 14.5030.514.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
15433-----+-+-----
15433-++---+-+----
15433------+-+----

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling date
15433human conjunctivaUSAUSANorth America
48252Human conjunctivaUSAUSANorth America1950
116054ConjunctivaUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Organ#Eye
#Infection#Patient
#Host#Human
#Infection#Inflammation

taxonmaps

  • @ref: 69479
  • File name: preview.99_36.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18;96_30;97_31;98_34;99_36&stattab=map
  • Last taxonomy: Haemophilus influenzae
  • 16S sequence: AY362905
  • Sequence Identity:
  • Total samples: 31536
  • soil counts: 173
  • aquatic counts: 597
  • animal counts: 30711
  • plant counts: 55

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
154332Risk group (German classification)
1160542Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Haemophilus aegyptius strain NCTC 8502 16S ribosomal RNA gene, partial sequenceM750441476ena197575
15433Haemophilus aegyptius ATCC 11116 strain CCUG 25716 16S ribosomal RNA gene, partial sequenceAY3629051362ena888728

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Haemophilus aegyptius NCTC8502GCA_900475885completencbi197575
66792Haemophilus aegyptius ATCC 11116GCA_000195005scaffoldncbi888728
66792Haemophilus aegyptius ATCC 11116888728.3wgspatric888728
66792Haemophilus aegyptius strain FDAARGOS_1478197575.11completepatric197575
66792Haemophilus aegyptius strain NCTC8502197575.8completepatric197575
66792Haemophilus aegyptius NCTC 85022808606679completeimg197575
66792Haemophilus aegyptius ATCC 11116651324038draftimg888728
66792Haemophilus aegyptius strain FDAARGOS_1478197575.14completepatric197575
66792Haemophilus aegyptius strain FDAARGOS_1478197575.13completepatric197575
66792Haemophilus aegyptius strain FDAARGOS_1478197575.12completepatric197575

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno96.425no
gram-positiveno97.913no
anaerobicno95.625no
aerobicno96.992no
halophileyes58.53no
spore-formingno98.453no
thermophileno98.706no
glucose-utilno53.553no
motileno90.073no
glucose-fermentyes53.114no

External links

@ref: 15433

culture collection no.: DSM 21187, ATCC 11116, CCUG 25716, CIP 52.129, NCTC 8502

straininfo link

  • @ref: 80930
  • straininfo: 35328

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny3013387Susceptibility of Haemophilus aegyptius to trooleandomycin: lack of taxonomic value.Martel AY, Sottnek FO, Thomas ML, Albritton WLCan J Microbiol10.1139/m86-0591986DNA Restriction Enzymes/analysis, DNA, Bacterial/analysis, Haemophilus/*classification/drug effects/genetics, Haemophilus influenzae/*classification/drug effects/genetics, Nucleic Acid Hybridization, Sequence Homology, Nucleic Acid, Troleandomycin/*pharmacologyPathogenicity
Metabolism9628358Sequence similarities between the genes encoding the S.NgoI and HaeII restriction/modification systems.Stein DC, Gunn JS, Piekarowicz ABiol Chem1998Amino Acid Sequence, DNA, Bacterial, DNA-Cytosine Methylases/*genetics/metabolism, Deoxyribonucleases, Type II Site-Specific/*genetics/metabolism, Genes, Bacterial, Haemophilus/*enzymology/genetics, Molecular Sequence Data, Neisseria gonorrhoeae/*enzymology/genetics, Sequence Homology, Amino Acid, Sequence Homology, Nucleic AcidEnzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15433Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21187)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21187
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
37737Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/13979
48252Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 25716)https://www.ccug.se/strain?id=25716
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life 35: 676-683 201728604660
68377Automatically annotated from API NH
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
80930Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID35328.1StrainInfo: A central database for resolving microbial strain identifiers
116054Curators of the CIPCollection of Institut Pasteur (CIP 52.129)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2052.129