Strain identifier

BacDive ID: 11708

Type strain: Yes

Species: Haemophilus parahaemolyticus

Strain Designation: 536

Strain history: CIP <- 1956, M. Pittman, N.I.H. : strain 536, Haemophilus haemolyticus

NCBI tax ID(s): 1095744 (strain), 735 (species)

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General

@ref: 15693

BacDive-ID: 11708

DSM-Number: 21417

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, Gram-negative

description: Haemophilus parahaemolyticus 536 is a microaerophile, Gram-negative bacterium that was isolated from human pulmonary infection.

NCBI tax id

NCBI tax idMatching level
735species
1095744strain

strain history

@refhistory
15693<- CCUG; 536 {2008} <- NCTC <- M. Pittman
376981956, M. Pittman, N.I.H. : strain 536, Haemophilus haemolyticus
121559CIP <- 1956, M. Pittman, N.I.H. : strain 536, Haemophilus haemolyticus

doi: 10.13145/bacdive11708.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Haemophilus
  • species: Haemophilus parahaemolyticus
  • full scientific name: Haemophilus parahaemolyticus Pittman 1953 (Approved Lists 1980)

@ref: 15693

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Haemophilus

species: Haemophilus parahaemolyticus

full scientific name: Haemophilus parahaemolyticus Pittman 1953

strain designation: 536

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
121559negativerod-shapedno
69480no91.397
69480negative97.978

colony morphology

@refincubation periodhemolysis ability
156932-3 days
1215591

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15693HAEMOPHILUS MEDIUM (DSMZ Medium 804)yeshttps://mediadive.dsmz.de/medium/804Name: HAEMOPHILUS MEDIUM (DSMZ Medium 804) Composition: Mueller-Hinton broth 21.0 g/l Yeast extract 5.0 g/l Distilled water
37698MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and NeisseriayesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml)
121559CIP Medium 10yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=10

culture temp

@refgrowthtypetemperature
15693positivegrowth37
37698positivegrowth37
121559positivegrowth25-37
121559nogrowth15
121559nogrowth41

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
15693microaerophile
121559obligate aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 93.732

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose+builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
121559esculin-hydrolysis4853
121559hippurate-hydrolysis606565
121559nitrate+reduction17632
121559nitrite-reduction16301
68377D-glucose+builds acid from17634
68377D-fructose+builds acid from15824
68377maltose+builds acid from17306
68377tryptophan-energy source27897

antibiotic resistance

  • @ref: 121559
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
12155935581indoleno

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
15693catalase+1.11.1.6
15693cytochrome-c oxidase+1.9.3.1
68377tryptophan deaminase-4.1.99.1
68377beta-galactosidase-3.2.1.23
121559oxidase+
121559beta-galactosidase-3.2.1.23
121559alcohol dehydrogenase-1.1.1.1
121559catalase+1.11.1.6
121559gamma-glutamyltransferase-2.3.2.2
121559lysine decarboxylase-4.1.1.18
121559ornithine decarboxylase-4.1.1.17
121559urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121559-+---+----++--------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
121559----------++---------+-----+--+------------+-----

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
15693++++-+-+-----
15693++++-+-+--+--
15693-++++-+-+--+-
15693-++++-+-+----

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling dategeographic locationisolation date
15693human pulmonary infectionUSAUSANorth America
44686Pulmonary infectionUSAUSANorth America1939South Carolina
121559Human, SputumUnited States of AmericaUSANorth AmericaSouth Carolina1939

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Host#Human
#Host Body-Site#Oral cavity and airways#Lung

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
156932Risk group (German classification)
1215592Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Haemophilus parahaemolyticus partial 16S rRNA gene, strain NCTC 8479TAJ2957461466nuccore1095744
15693Haemophilus parahaemolyticus strain NCTC 8479 16S ribosomal RNA gene, partial sequenceM750731477nuccore735
124043Haemophilus parahaemolyticus NCTC 8479 gene for 16S rRNA, partial sequence.LC7524061466nuccore735

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Haemophilus parahaemolyticus CCUG 3716GCA_002015035scaffoldncbi735
66792Haemophilus parahaemolyticus HK385 NCTC 8479GCA_900450675contigncbi1095744
66792Haemophilus parahaemolyticus HK385 strain NCTC 84791095744.7wgspatric1095744
66792Haemophilus parahaemolyticus strain CCUG 3716735.3wgspatric735
66792Haemophilus parahaemolyticus strain FDAARGOS_1199735.52completepatric735
66792Haemophilus parahaemolyticus NCTC 84792916270391draftimg1095744
66792Haemophilus parahaemolyticus CCUG 37162924818472draftimg735

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingno97.978no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no91.738yes
69480spore-formingspore-formingAbility to form endo- or exosporesno93.732no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no87.182no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno98yes
69480flagellatedmotile2+Ability to perform flagellated movementno91.397no

External links

@ref: 15693

culture collection no.: DSM 21417, ATCC 10014, CCUG 3716, CIP 56.86, NCTC 8479

straininfo link

  • @ref: 80928
  • straininfo: 389305

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15693Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21417)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21417
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
37698Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/9571
44686Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 3716)https://www.ccug.se/strain?id=3716
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68371Automatically annotated from API 50CH acid
68377Automatically annotated from API NH
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
80928Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389305.1StrainInfo: A central database for resolving microbial strain identifiers
121559Curators of the CIPCollection of Institut Pasteur (CIP 56.86)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2056.86
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy