Strain identifier

BacDive ID: 11688

Type strain: Yes

Species: Actinobacillus arthritidis

Strain Designation: P. 907

Strain history: CIP <- 2002, CCUG <- R. Mutters, Marburg, Germany <- A.S. Browne <- P.W. Wetmore

NCBI tax ID(s): 157339 (species)

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General

@ref: 16240

BacDive-ID: 11688

DSM-Number: 22258

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, Gram-negative, rod-shaped, animal pathogen

description: Actinobacillus arthritidis P. 907 is a microaerophile, Gram-negative, rod-shaped animal pathogen that was isolated from horse joint.

NCBI tax id

  • NCBI tax id: 157339
  • Matching level: species

strain history

@refhistory
16240<- CCUG <- R. Mutters <- A. S. Browne <- ? <- P. W. Wetmore; 1706
116510CIP <- 2002, CCUG <- R. Mutters, Marburg, Germany <- A.S. Browne <- P.W. Wetmore

doi: 10.13145/bacdive11688.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Actinobacillus
  • species: Actinobacillus arthritidis
  • full scientific name: Actinobacillus arthritidis Christensen et al. 2002

@ref: 16240

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Actinobacillus

species: Actinobacillus arthritidis

full scientific name: Actinobacillus arthritidis Christensen et al. 2002

strain designation: P. 907

type strain: yes

Morphology

cell morphology

  • @ref: 116510
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 116510

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16240BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
41663MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116510CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
16240positivegrowth37
41663positivegrowth37
48071positivegrowth37
116510positivegrowth25-41
116510nogrowth15
116510nogrowth45

Physiology and metabolism

oxygen tolerance

  • @ref: 48071
  • oxygen tolerance: microaerophile

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 94.788

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1165104853esculin-hydrolysis
116510606565hippurate+hydrolysis
11651017632nitrate+reduction
11651016301nitrite+reduction
6837717634D-glucose+builds acid from
6837715824D-fructose+builds acid from
6837717306maltose+builds acid from
6837727897tryptophan-energy source

antibiotic resistance

  • @ref: 116510
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
11651035581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
6837735581indole-
11651015688acetoin-

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377alkaline phosphatase+3.1.3.1
116510oxidase-
116510beta-galactosidase+3.2.1.23
116510alcohol dehydrogenase-1.1.1.1
116510catalase-1.11.1.6
116510gamma-glutamyltransferase-2.3.2.2
116510lysine decarboxylase-4.1.1.18
116510ornithine decarboxylase-4.1.1.17
116510urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116510-+--------++-+------

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
16240++++-+-++-+--
16240-++++-+-++-+-

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
16240horse jointCzech RepublicCZEEurope
48071Horse jointCzech RepublicCZEEurope
116510Animal, Horse jointCzech RepublicCZEEurope

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Equidae (Horse)
#Host Body-Site#Limb#Joint

taxonmaps

  • @ref: 69479
  • File name: preview.99_35667.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18;96_155;97_166;98_26313;99_35667&stattab=map
  • Last taxonomy: Actinobacillus arthritidis subclade
  • 16S sequence: L06084
  • Sequence Identity:
  • Total samples: 14
  • animal counts: 14

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
16240yes2Risk group (German classification)
1165101Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Actinobacillus sp. CCUG 24862 partial 16S rRNA gene, strain CCUG 24862AJ438673435nuccore157339
20218Actinobacillus arthritidis CCUG:24862 16S ribosomal RNA gene, partial sequenceL060841485nuccore157339
16240Actinobacillus sp. CCUG 24862 16S ribosomal RNA gene, partial sequenceAF2477121461nuccore157339
16240Actinobacillus arthritidis strain CCUG 24862 16S ribosomal RNA gene, partial sequenceAY3629291362nuccore157339

Genome sequences

  • @ref: 66792
  • description: Actinobacillus arthritidis CCUG24862
  • accession: GCA_029774155
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 157339

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingno78.027no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no71.47yes
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no90.997yes
69480spore-formingspore-formingAbility to form endo- or exosporesno94.788no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno91.677no
69480flagellatedmotile2+Ability to perform flagellated movementno81.292no

External links

@ref: 16240

culture collection no.: DSM 22258, ATCC 13376, CCUG 24862, CIP 107664, MCCM 00398, CCM 5500, Wetmore 1706, HIM 1034-2

straininfo link

  • @ref: 80908
  • straininfo: 46502

literature

  • topic: Phylogeny
  • Pubmed-ID: 12148635
  • title: Final classification of Bisgaard taxon 9 as Actinobacillus arthritidis sp. nov. and recognition of a novel genomospecies for equine strains of Actinobacillus lignieresii.
  • authors: Christensen H, Bisgaard M, Angen O, Olsen JE
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-52-4-1239
  • year: 2002
  • mesh: Actinobacillus/*classification/genetics/isolation & purification, Actinobacillus Infections/microbiology/*veterinary, Animals, Arthritis/microbiology/*veterinary, DNA, Ribosomal/analysis, Horse Diseases/*microbiology, Horses, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Serotyping
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16240Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22258)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22258
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41663Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5124
48071Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 24862)https://www.ccug.se/strain?id=24862
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68377Automatically annotated from API NH
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
80908Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID46502.1StrainInfo: A central database for resolving microbial strain identifiers
116510Curators of the CIPCollection of Institut Pasteur (CIP 107664)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107664