Strain identifier

BacDive ID: 11688

Type strain: Yes

Species: Actinobacillus arthritidis

Strain Designation: P. 907

Strain history: CIP <- 2002, CCUG <- R. Mutters, Marburg, Germany <- A.S. Browne <- P.W. Wetmore

NCBI tax ID(s): 157339 (species)

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General

@ref: 16240

BacDive-ID: 11688

DSM-Number: 22258

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, rod-shaped, animal pathogen

description: Actinobacillus arthritidis P. 907 is a microaerophile, mesophilic, Gram-negative animal pathogen that was isolated from horse joint.

NCBI tax id

  • NCBI tax id: 157339
  • Matching level: species

strain history

@refhistory
16240<- CCUG <- R. Mutters <- A. S. Browne <- ? <- P. W. Wetmore; 1706
116510CIP <- 2002, CCUG <- R. Mutters, Marburg, Germany <- A.S. Browne <- P.W. Wetmore

doi: 10.13145/bacdive11688.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Actinobacillus
  • species: Actinobacillus arthritidis
  • full scientific name: Actinobacillus arthritidis Christensen et al. 2002

@ref: 16240

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Actinobacillus

species: Actinobacillus arthritidis

full scientific name: Actinobacillus arthritidis Christensen et al. 2002

strain designation: P. 907

type strain: yes

Morphology

cell morphology

  • @ref: 116510
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 116510

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16240BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
41663MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116510CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
16240positivegrowth37mesophilic
41663positivegrowth37mesophilic
48071positivegrowth37mesophilic
116510positivegrowth25-41
116510nogrowth15psychrophilic
116510nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 48071
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1165104853esculin-hydrolysis
116510606565hippurate+hydrolysis
11651017632nitrate+reduction
11651016301nitrite+reduction
6837717634D-glucose+builds acid from
6837715824D-fructose+builds acid from
6837717306maltose+builds acid from
6837727897tryptophan-energy source

antibiotic resistance

  • @ref: 116510
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
11651035581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
6837735581indole-
11651015688acetoin-

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377alkaline phosphatase+3.1.3.1
116510oxidase-
116510beta-galactosidase+3.2.1.23
116510alcohol dehydrogenase-1.1.1.1
116510catalase-1.11.1.6
116510gamma-glutamyltransferase-2.3.2.2
116510lysine decarboxylase-4.1.1.18
116510ornithine decarboxylase-4.1.1.17
116510urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116510-+--------++-+------

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
16240++++-+-++-+--
16240-++++-+-++-+-

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
16240horse jointCzech RepublicCZEEurope
48071Horse jointCzech RepublicCZEEurope
116510Animal, Horse jointCzech RepublicCZEEurope

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Equidae (Horse)
#Host Body-Site#Limb#Joint

taxonmaps

  • @ref: 69479
  • File name: preview.99_35667.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18;96_155;97_166;98_26313;99_35667&stattab=map
  • Last taxonomy: Actinobacillus arthritidis subclade
  • 16S sequence: L06084
  • Sequence Identity:
  • Total samples: 14
  • animal counts: 14

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
16240yes2Risk group (German classification)
1165101Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Actinobacillus sp. CCUG 24862 partial 16S rRNA gene, strain CCUG 24862AJ438673435ena157339
20218Actinobacillus arthritidis CCUG:24862 16S ribosomal RNA gene, partial sequenceL060841485ena157339
16240Actinobacillus sp. CCUG 24862 16S ribosomal RNA gene, partial sequenceAF2477121461ena157339
16240Actinobacillus arthritidis strain CCUG 24862 16S ribosomal RNA gene, partial sequenceAY3629291362ena157339

Genome sequences

  • @ref: 66792
  • description: Actinobacillus arthritidis CCUG24862
  • accession: GCA_029774155
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 157339

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno88.053no
flagellatedno95.33no
gram-positiveno96.393no
anaerobicno89.476yes
aerobicno93.417yes
halophileyes54.098no
spore-formingno98.796no
glucose-fermentyes66.31no
thermophileno95.218yes
glucose-utilyes71.853no

External links

@ref: 16240

culture collection no.: DSM 22258, ATCC 13376, CCUG 24862, CIP 107664, MCCM 00398, CCM 5500, Wetmore 1706, HIM 1034-2

straininfo link

  • @ref: 80908
  • straininfo: 46502

literature

  • topic: Phylogeny
  • Pubmed-ID: 12148635
  • title: Final classification of Bisgaard taxon 9 as Actinobacillus arthritidis sp. nov. and recognition of a novel genomospecies for equine strains of Actinobacillus lignieresii.
  • authors: Christensen H, Bisgaard M, Angen O, Olsen JE
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-52-4-1239
  • year: 2002
  • mesh: Actinobacillus/*classification/genetics/isolation & purification, Actinobacillus Infections/microbiology/*veterinary, Animals, Arthritis/microbiology/*veterinary, DNA, Ribosomal/analysis, Horse Diseases/*microbiology, Horses, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Serotyping
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16240Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22258)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22258
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41663Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5124
48071Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 24862)https://www.ccug.se/strain?id=24862
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68377Automatically annotated from API NH
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80908Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID46502.1StrainInfo: A central database for resolving microbial strain identifiers
116510Curators of the CIPCollection of Institut Pasteur (CIP 107664)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107664