Strain identifier

BacDive ID: 11679

Type strain: Yes

Species: Actinobacillus lignieresii

Strain history: CIP <- 1953, NCTC <- L. Thompson

NCBI tax ID(s): 720 (species)

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General

@ref: 16238

BacDive-ID: 11679

DSM-Number: 22256

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, human pathogen

description: Actinobacillus lignieresii CIP 107665 is an aerobe, mesophilic human pathogen that was isolated from cattle, throat glands.

NCBI tax id

  • NCBI tax id: 720
  • Matching level: species

strain history

@refhistory
16238<- CCUG <- Ö. Angen <- ATCC <- NCTC <- L. Thompson
120597CIP <- 1953, NCTC <- L. Thompson

doi: 10.13145/bacdive11679.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Actinobacillus
  • species: Actinobacillus lignieresii
  • full scientific name: Actinobacillus lignieresii Brumpt 1910 (Approved Lists 1980)

@ref: 16238

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Actinobacillus

species: Actinobacillus lignieresii

full scientific name: Actinobacillus lignieresii Brumpt 1910

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16238BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
33854MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
41297MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicolayesDistilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g)
120597CIP Medium 118-byeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=118-b

culture temp

@refgrowthtypetemperaturerange
16238positivegrowth37mesophilic
33854positivegrowth37mesophilic
41297positivegrowth37mesophilic
55040positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 55040
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837717634D-glucose+builds acid from
6837715824D-fructose+builds acid from
6837717306maltose+builds acid from
6837727897tryptophan-energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase-3.4.11.5
68377alkaline phosphatase+3.1.3.1

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
16238++++-+-++----
16238-++++-+-++---

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinentisolation date
16238cattle, throat glands
55040Cattle,retropharyngal gland1933CopenhagenDenmarkDNKEurope
120597Animal, Cattle, retropharyngeal glandCopenhagenDenmarkDNKEurope1933

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body-Site#Oral cavity and airways#Throat

taxonmaps

  • @ref: 69479
  • File name: preview.99_217.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18;96_155;97_166;98_185;99_217&stattab=map
  • Last taxonomy: Actinobacillus
  • 16S sequence: M75068
  • Sequence Identity:
  • Total samples: 6023
  • soil counts: 221
  • aquatic counts: 203
  • animal counts: 5580
  • plant counts: 19

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
16238yesyes2Risk group (German classification)
1205971Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Actinobacillus lignieresii partial 16S rRNA gene, strain P151AJ438688437ena720
20218Actinobacillus lignieresii strain NCTC 4189 16S ribosomal RNA gene, partial sequenceM750681487ena720
16238Actinobacillus lignieresii strain NCTC 4189 16S ribosomal RNA gene, partial sequenceAY3628921364ena720

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Actinobacillus lignieresii NCTC4189GCA_900444945contigncbi720
66792Actinobacillus lignieresii strain NCTC4189720.4wgspatric720
66792Actinobacillus lignieresii NCTC 41892808606643draftimg720

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno90.267no
flagellatedno92.715no
gram-positiveno98.15no
anaerobicno96.933no
aerobicno86.499yes
halophileno59.03no
spore-formingno98.913no
thermophileno98.933no
glucose-utilno51.133no
glucose-fermentyes51.531no

External links

@ref: 16238

culture collection no.: CIP 107665, DSM 22256, ATCC 49236, CCUG 41384, CIP 53.130, NCTC 4189

straininfo link

  • @ref: 80899
  • straininfo: 389263

literature

  • topic: Phylogeny
  • Pubmed-ID: 20023064
  • title: Orbus hercynius gen. nov., sp. nov., isolated from faeces of wild boar, is most closely related to members of the orders 'Enterobacteriales' and Pasteurellales.
  • authors: Volkmann M, Skiebe E, Kerrinnes T, Faber F, Lepka D, Pfeifer Y, Holland G, Bannert N, Wilharm G
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.019026-0
  • year: 2009
  • mesh: Animals, Base Composition, DNA, Bacterial/genetics, Fatty Acids/metabolism, Feces/*microbiology, Gammaproteobacteria/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sus scrofa/*microbiology
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16238Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22256)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22256
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33854Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5125
41297Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16711
55040Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 41384)https://www.ccug.se/strain?id=41384
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68377Automatically annotated from API NH
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80899Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389263.1StrainInfo: A central database for resolving microbial strain identifiers
120597Curators of the CIPCollection of Institut Pasteur (CIP 53.130)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2053.130