Strain identifier
BacDive ID: 1154
Type strain:
Species: Bacillus horti
Strain Designation: K 13, K13
Strain history: CIP <- 1998, JCM <- I. Yumoto: strain K13
NCBI tax ID(s): 77523 (species)
General
@ref: 4802
BacDive-ID: 1154
DSM-Number: 12751
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, spore-forming, mesophilic, Gram-negative, motile, rod-shaped
description: Bacillus horti K 13 is an obligate aerobe, spore-forming, mesophilic bacterium that was isolated from garden soil.
NCBI tax id
- NCBI tax id: 77523
- Matching level: species
strain history
@ref | history |
---|---|
4802 | <- I. Yumoto, HNIRI, Japan; K 13 |
67770 | I. Yumoto K13. |
119974 | CIP <- 1998, JCM <- I. Yumoto: strain K13 |
doi: 10.13145/bacdive1154.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus horti
- full scientific name: Bacillus horti Yumoto et al. 1998
@ref: 4802
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus horti
full scientific name: Bacillus horti Yumoto et al. 1998
strain designation: K 13, K13
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | flagellum arrangement |
---|---|---|---|---|---|---|
23305 | negative | 1.5-6.0 µm | 0.6-0.8 µm | rod-shaped | yes | peritrichous |
119974 | negative | rod-shaped | yes |
colony morphology
@ref | colony color |
---|---|
23305 | white |
119974 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
4802 | ALKALINE NUTRIENT AGAR (DSMZ Medium 31) | yes | https://mediadive.dsmz.de/medium/31 | Name: ALKALINE NUTRIENT AGAR (DSMZ Medium 31) Composition: Agar 15.0 g/l Na2CO3 anhydrous 5.3 g/l Peptone 5.0 g/l NaHCO3 4.2 g/l Meat extract 3.0 g/l Distilled water |
35192 | MEDIUM 6 - Columbia agar with 10 % horse blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) | |
119974 | CIP Medium 6 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6 | |
119974 | CIP Medium 291 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=291 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
4802 | positive | growth | 30 | mesophilic |
23305 | no | growth | 10 | psychrophilic |
23305 | positive | growth | 40 | thermophilic |
23305 | no | growth | 50 | thermophilic |
23305 | no | growth | 5 | psychrophilic |
23305 | positive | growth | 15 | psychrophilic |
23305 | no | growth | 45 | thermophilic |
23305 | no | growth | 55 | thermophilic |
35192 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
119974 | positive | growth | 30-37 | mesophilic |
119974 | no | growth | 10 | psychrophilic |
119974 | no | growth | 45 | thermophilic |
119974 | no | growth | 55 | thermophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
23305 | positive | growth | 7 | |
23305 | positive | optimum | 8-10 | alkaliphile |
119974 | no | growth | 6 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
23305 | obligate aerobe |
119974 | obligate aerobe |
spore formation
- @ref: 23305
- spore description: subterminally located ellipsoidal spores
- type of spore: endospore
- spore formation: yes
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
23305 | NaCl | positive | growth | 10 % |
23305 | NaCl | positive | growth | 5 % |
23305 | NaCl | positive | growth | 3 % |
23305 | NaCl | positive | growth | 7 % |
23305 | NaCl | positive | growth | 9 % |
23305 | NaCl | positive | growth | 11 % |
23305 | NaCl | no | growth | 12 % |
23305 | NaCl | no | growth | 13 % |
23305 | NaCl | no | growth | 14 % |
23305 | NaCl | no | growth | 15 % |
23305 | NaCl | no | growth | 16 % |
23305 | NaCl | no | growth | 17 % |
23305 | NaCl | no | growth | 18 % |
23305 | NaCl | no | growth | 20 % |
119974 | NaCl | positive | growth | 6-10 % |
119974 | NaCl | no | growth | 0 % |
119974 | NaCl | no | growth | 2 % |
119974 | NaCl | no | growth | 4 % |
observation
- @ref: 67770
- observation: quinones: MK-7
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
23305 | 28044 | phenylalanine | - | assimilation |
23305 | 22599 | arabinose | - | builds acid from |
23305 | 12936 | D-galactose | - | builds acid from |
23305 | 17113 | erythritol | - | builds acid from |
23305 | 62345 | L-rhamnose | - | builds acid from |
23305 | 17268 | myo-inositol | - | builds acid from |
23305 | 17992 | sucrose | - | builds acid from |
23305 | 15824 | D-fructose | - | builds gas from |
23305 | 17634 | D-glucose | - | builds gas from |
23305 | 16988 | D-ribose | - | builds gas from |
23305 | 65327 | D-xylose | - | builds gas from |
23305 | 53424 | tween 20 | - | hydrolysis |
23305 | 53423 | tween 40 | - | hydrolysis |
23305 | 53425 | tween 60 | - | hydrolysis |
23305 | 53426 | tween 80 | - | hydrolysis |
23305 | 16199 | urea | - | hydrolysis |
23305 | 15824 | D-fructose | + | builds acid from |
23305 | 17634 | D-glucose | + | builds acid from |
23305 | 16988 | D-ribose | + | builds acid from |
23305 | 65327 | D-xylose | + | builds acid from |
23305 | casein | + | hydrolysis | |
23305 | 16991 | dna | + | hydrolysis |
23305 | 5291 | gelatin | + | hydrolysis |
23305 | 606565 | hippurate | + | hydrolysis |
23305 | 28017 | starch | + | hydrolysis |
23305 | 17632 | nitrate | + | reduction |
119974 | 16947 | citrate | - | carbon source |
119974 | 4853 | esculin | - | hydrolysis |
119974 | 606565 | hippurate | + | hydrolysis |
119974 | 17632 | nitrate | + | reduction |
119974 | 16301 | nitrite | - | reduction |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
23305 | 35581 | indole | no |
119974 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
119974 | 15688 | acetoin | - | |
119974 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
23305 | beta-galactosidase | + | 3.2.1.23 |
23305 | catalase | + | 1.11.1.6 |
23305 | cytochrome oxidase | + | 1.9.3.1 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | + | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
119974 | oxidase | + | |
119974 | beta-galactosidase | + | 3.2.1.23 |
119974 | alcohol dehydrogenase | - | 1.1.1.1 |
119974 | gelatinase | + | |
119974 | amylase | + | |
119974 | DNase | + | |
119974 | caseinase | + | 3.4.21.50 |
119974 | catalase | + | 1.11.1.6 |
119974 | tween esterase | - | |
119974 | gamma-glutamyltransferase | - | 2.3.2.2 |
119974 | lecithinase | - | |
119974 | lipase | - | |
119974 | lysine decarboxylase | - | 4.1.1.18 |
119974 | ornithine decarboxylase | - | 4.1.1.17 |
119974 | protease | - | |
119974 | tryptophan deaminase | - | |
119974 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119974 | - | + | + | + | - | + | - | - | - | + | + | + | - | - | - | - | + | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119974 | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
4802 | garden soil | Hokkaido, Astuma | Japan | JPN | Asia |
67770 | Soil | Atsuma, Hokkaido | Japan | JPN | Asia |
119974 | Environment, Soil | Japan | JPN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Soil |
#Engineered | #Agriculture | #Garden |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
4802 | 1 | Risk group (German classification) |
119974 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 23305
- description: Bacillus horti gene for 16S rRNA, partial sequence
- accession: D87035
- length: 1512
- database: nuccore
- NCBI tax ID: 77523
Genome sequences
- @ref: 66792
- description: Bacillus horti DSM 12751
- accession: 2926514369
- assembly level: draft
- database: img
- NCBI tax ID: 77523
GC content
@ref | GC-content | method |
---|---|---|
23305 | 40.9 | high performance liquid chromatography (HPLC) |
67770 | 40 | high performance liquid chromatography (HPLC) |
External links
@ref: 4802
culture collection no.: DSM 12751, JCM 9943, ATCC 700778, CGMCC 1.3650, CIP 105746, KCTC 3838, LMG 18497
straininfo link
- @ref: 70825
- straininfo: 12121
literature
- topic: Phylogeny
- Pubmed-ID: 9731298
- title: Bacillus horti sp. nov., a new gram-negative alkaliphilic bacillus.
- authors: Yumoto I, Yamazaki K, Sawabe T, Nakano K, Kawasaki K, Ezura Y, Shinano H
- journal: Int J Syst Bacteriol
- DOI: 10.1099/00207713-48-2-565
- year: 1998
- mesh: Bacillus/*classification/physiology/ultrastructure, Base Sequence, DNA, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/analysis, RNA, Ribosomal, 16S/analysis, Sequence Analysis, RNA
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
4802 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12751) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12751 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
23305 | Isao Yumoto, Koji Yamazaki, Tomoo Sawabe, Kazuaki Nakano, Kosei Kawasaki, Yoshio Ezura, Haruo Shinano | 10.1099/00207713-48-2-565 | Bacillus horti sp. nov., a new Gram-negative alkaliphilic bacillus | IJSEM 48: 565-571 1998 | 9731298 | |
35192 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17799 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68382 | Automatically annotated from API zym | |||||
70825 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID12121.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
119974 | Curators of the CIP | Collection of Institut Pasteur (CIP 105746) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105746 |