Strain identifier
BacDive ID: 11438
Type strain: 
Species: Brevibacillus ginsengisoli
Strain history: <- ST Lee, KAIST
NCBI tax ID(s): 363854 (species)
version 8.1 (current version)
General
@ref: 15632
BacDive-ID: 11438
DSM-Number: 21346
keywords: 16S sequence, Bacteria, facultative anaerobe, spore-forming, mesophilic, motile, rod-shaped
description: Brevibacillus ginsengisoli DSM 21346 is a facultative anaerobe, spore-forming, mesophilic bacterium that was isolated from soil, ginseng field.
NCBI tax id
- NCBI tax id: 363854
- Matching level: species
strain history
| @ref | history |
|---|---|
| 15632 | <- LMG <- S.-T. Lee; Gsoil 3088 |
| 67771 | <- ST Lee, KAIST |
doi: 10.13145/bacdive11438.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Brevibacillus
- species: Brevibacillus ginsengisoli
- full scientific name: Brevibacillus ginsengisoli Baek et al. 2006
@ref: 15632
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Brevibacillus
species: Brevibacillus ginsengisoli
full scientific name: Brevibacillus ginsengisoli Baek et al. 2006
type strain: yes
Morphology
cell morphology
| @ref | cell shape | motility | gram stain |
|---|---|---|---|
| 67771 | rod-shaped | yes | |
| 67771 | curved-shaped | ||
| 67771 | positive |
Culture and growth conditions
culture medium
- @ref: 15632
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 15632 | positive | growth | 30 | mesophilic |
| 67771 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: facultative anaerobe
spore formation
- @ref: 67771
- type of spore: spore
- spore formation: yes
observation
- @ref: 67771
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 15632 | soil, ginseng field | Pocheon Province | Republic of Korea | KOR | Asia |
| 67771 | From soil of the ginseng field | Pocheon Province | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Agriculture | #Field |
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
taxonmaps
- @ref: 69479
- File name: preview.99_42070.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_95;96_577;97_24178;98_30579;99_42070&stattab=map
- Last taxonomy: Brevibacillus
- 16S sequence: AB245376
- Sequence Identity:
- Total samples: 1191
- soil counts: 698
- aquatic counts: 98
- animal counts: 25
- plant counts: 370
Safety information
risk assessment
- @ref: 15632
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 15632
- description: Brevibacillus ginsengisoli gene for 16S rRNA, partial sequence, strain: Gsoil 3088
- accession: AB245376
- length: 1456
- database: ena
- NCBI tax ID: 363854
GC content
| @ref | GC-content | method |
|---|---|---|
| 15632 | 52.1 | |
| 67771 | 52.1 | high performance liquid chromatography (HPLC) |
External links
@ref: 15632
culture collection no.: DSM 21346, KCTC 13938, LMG 23403, Gsoil 3088
straininfo link
- @ref: 80676
- straininfo: 289779
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 17082408 | Brevibacillus ginsengisoli sp. nov., a denitrifying bacterium isolated from soil of a ginseng field. | Baek SH, Im WT, Oh HW, Lee JS, Oh HM, Lee ST | Int J Syst Evol Microbiol | 10.1099/ijs.0.64382-0 | 2006 | Bacterial Typing Techniques, Base Composition, Carbon/metabolism, Caseins/metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis/chemistry, Gelatin/metabolism, Genes, rRNA, Gram-Positive Endospore-Forming Rods/*classification/genetics/*isolation & purification/physiology, Korea, Molecular Sequence Data, Nitrates/metabolism, *Panax, Phylogeny, Quinones/analysis/chemistry, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil Microbiology, Starch/metabolism | Metabolism |
| Phylogeny | 32931405 | Brevibacillus migulae sp. nov., isolated from a Yellow River sediment sample. | Niu M, Ming H, Cheng LJ, Yi BF, Xia TT, Li M, Nie GX | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004462 | 2020 | Bacterial Typing Techniques, Base Composition, Brevibacillus/*classification/isolation & purification, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 15632 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21346) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21346 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 80676 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID289779.1 | StrainInfo: A central database for resolving microbial strain identifiers |