Brevibacillus ginsengisoli (DSM 21346, KCTC 13938, LMG 23403)

Name: Brevibacillus ginsengisoli (DSM 21346, KCTC 13938, LMG 23403)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11438

Type strain

Culture col. no. DSM 21346 KCTC 13938 LMG 23403 Gsoil 3088

NCBI tax ID(s) 363854

Special Collections DSMZ KCTC

History DSMZ <- LMG <- S.-T. Lee; Gsoil 3088 KCTC <- ST Lee, KAIST

Links

Brevibacillus ginsengisoli DSM 21346 is a facultative anaerobe, spore-forming, motile bacterium that was isolated from soil, ginseng field.

spore-forming motile rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 289779

LMG 23403,KCTC 13938,DSM 21346

@ref 20215

Last LPSN update 2026-05-29 08:27:33

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Brevibacillus

Species Brevibacillus ginsengisoli

Full scientific name Brevibacillus ginsengisoli Baek et al. 2006

Morphology

Cell morphology

@ref	Cell shape	Gram stain
67771	rod-shaped
67771	curved-shaped
67771		positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
15632	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
15632	positive	growth	30
67771	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67771	facultative anaerobe
125439	facultative anaerobe	92.692

Spore formation

@ref	Type of spore	Spore formation	Confidence
67771	spore
125439			90.469

Observation

67771

Observationquinones: MK-7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
15632	soil, ginseng field	Pocheon Province	Republic of Korea	KOR	Asia
67771	From soil of the ginseng field	Pocheon Province	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB245376 (>99% sequence identity) for Brevibacillus from Microbeatlas

Aquatic Samples	98
Soil Samples	698
Animal Samples	25
Plant Samples	370
Total Samples	1191

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15632	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM5011371v1 assembly for Brevibacillus ginsengisoli KCTC 13938	scaffold	GCA_050113715	363854	46.02

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15632	Brevibacillus ginsengisoli gene for 16S rRNA, partial sequence, strain: Gsoil 3088	AB245376	1456		363854

GC content

@ref	GC-content (mol%)	Method
15632	52.1
67771	52.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM5011371v1 assembly for Brevibacillus ginsengisoli KCTC 13938
NCBI: GCA_050113715

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	92.69	no
125439	gram_stain	BacteriaNetⓘ	variable	75.48	no
125439	motility	BacteriaNetⓘ	yes	85.06	no
125439	spore_formation	BacteriaNetⓘ	yes	90.47	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Effective Se reduction by lactate-stimulated indigenous microbial communities in excavated waste rocks.	Aoyagi T, Mori Y, Nanao M, Matsuyama Y, Sato Y, Inaba T, Aizawa H, Hayakawa T, Moriya M, Higo Y, Habe H, Hori T.	J Hazard Mater	10.1016/j.jhazmat.2020.123908	2021
	Deciphering the genetic and functional diversity of cultivable bacteria from chasmophytic pigweed (Chenopodium album) from Tsomoriri, Ladakh, India.	Das S, Verma S, Choudhary P, Singh R, Saxena AK.	3 Biotech	10.1007/s13205-022-03278-0	2022
Phylogeny	Brevibacillus migulae sp. nov., isolated from a Yellow River sediment sample.	Niu M, Ming H, Cheng LJ, Yi BF, Xia TT, Li M, Nie GX	Int J Syst Evol Microbiol	10.1099/ijsem.0.004462	2020
Phylogeny	Brevibacillus ginsengisoli sp. nov., a denitrifying bacterium isolated from soil of a ginseng field.	Baek SH, Im WT, Oh HW, Lee JS, Oh HM, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.64382-0	2006

References

#15632	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21346
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Brevibacillus ginsengisoli (DSM 21346, KCTC 13938, LMG 23403)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_050113715

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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