Strain identifier
BacDive ID: 11357
Type strain: 
Species: Herbaspirillum rubrisubalbicans
Strain Designation: B 579
Variant: Isotype of BacDive ID 11356
Strain history: <- ATCC <- NCPPB <- A. C. Hayward, 5A
NCBI tax ID(s): 80842 (species)
General
@ref: 4409
BacDive-ID: 11357
DSM-Number: 11543
keywords: Bacteria, mesophilic, plant pathogen
description: Herbaspirillum rubrisubalbicans B 579 is a mesophilic plant pathogen that was isolated from Saccharum officinalis.
NCBI tax id
- NCBI tax id: 80842
- Matching level: species
strain history
- @ref: 4409
- history: <- ATCC <- NCPPB <- A. C. Hayward, 5A
doi: 10.13145/bacdive11357.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Oxalobacteraceae
- genus: Herbaspirillum
- species: Herbaspirillum rubrisubalbicans
- full scientific name: Herbaspirillum rubrisubalbicans (Christopher and Edgerton 1930) Baldani et al. 1996
synonyms
@ref synonym 20215 Phytomonas rubrisubalbicans 20215 Pseudomonas rubrisubalbicans
@ref: 4409
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Oxalobacteraceae
genus: Herbaspirillum
species: Herbaspirillum rubrisubalbicans
full scientific name: Herbaspirillum rubrisubalbicans (Christopher and Edgerton 1930) Baldani et al. 1996
strain designation: B 579
variant: Isotype of BacDive ID 11356
type strain: yes
Culture and growth conditions
culture medium
- @ref: 4409
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 4409
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 4409
- sample type: Saccharum officinalis
- host species: Saccharum officinarum
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Host
- Cat2: #Plants
- Cat3: #Herbaceous plants (Grass,Crops)
Safety information
risk assessment
- @ref: 4409
- pathogenicity plant: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
External links
@ref: 4409
culture collection no.: DSM 11543, ATCC 19308, DSM 9440, ICMP 5777, NCPPB 1027, Hayward 5A
literature
- topic: Phylogeny
- Pubmed-ID: 8782693
- title: Emended description of Herbaspirillum; inclusion of [Pseudomonas] rubrisubalbicans, a milk plant pathogen, as Herbaspirillum rubrisubalbicans comb. nov.; and classification of a group of clinical isolates (EF group 1) as Herbaspirillum species 3.
- authors: Baldani JI, Pot B, Kirchhof G, Falsen E, Baldani VL, Olivares FL, Hoste B, Kersters K, Hartmann A, Gillis M, Dobereiner J
- journal: Int J Syst Bacteriol
- DOI: 10.1099/00207713-46-3-802
- year: 1996
- mesh: Base Sequence, DNA Probes, Edible Grain/*microbiology, Gram-Negative Aerobic Bacteria/*classification/isolation & purification, Molecular Sequence Data, Phylogeny, Pseudomonas/classification/isolation & purification
- topic2: Enzymology
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4409 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11543) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11543 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ |