Strain identifier

BacDive ID: 11244

Type strain: Yes

Species: Streptomonospora salina

Strain history: CIP <- 2002, C.L. Jiang, Yunnan Univ., Kunming, China <- CCTCC <- CCRC <- DSMZ <- YIM

NCBI tax ID(s): 104205 (species)

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General

@ref: 11908

BacDive-ID: 11244

DSM-Number: 44593

keywords: genome sequence, 16S sequence, Bacteria

description: Streptomonospora salina DSM 44593 is a bacterium that was isolated from soil sample from a salt lake.

NCBI tax id

  • NCBI tax id: 104205
  • Matching level: species

strain history

@refhistory
11908<- C.-L. Jiang, YIM
67770CCRC 16284 <-- C.-L. Jiang YIM 90002.
122381CIP <- 2002, C.L. Jiang, Yunnan Univ., Kunming, China <- CCTCC <- CCRC <- DSMZ <- YIM

doi: 10.13145/bacdive11244.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Nocardiopsidaceae
  • genus: Streptomonospora
  • species: Streptomonospora salina
  • full scientific name: Streptomonospora salina corrig. Cui et al. 2001

  • synonyms

    • @ref: 20215
    • synonym: Streptimonospora salina

@ref: 11908

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiopsaceae

genus: Streptomonospora

species: Streptomonospora salina

full scientific name: Streptomonospora salina Cui et al. 2001

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
122381positivefilament-shapedno
69480no92.5

multimedia

  • @ref: 11908
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_44593.jpg
  • caption: Medium 1159 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11908GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159)yeshttps://mediadive.dsmz.de/medium/1159Name: GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159) Composition: NaCl 100.0 g/l Agar 15.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
33778MEDIUM 432 - for Streptomonospora salinayesDistilled water make up to (1000.000 ml);Sodium chloride (150.000 g);Agar (15.000 g);Glycerol (10.000 g);Di Potassium monohydrogenophosphate (1.000 g);L-Asparagine (1.000 g);Trace salt solution - M00447 (1.000 ml)
11908GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65; with strain-specific modifications) Composition: NaCl 150.0 g/l Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
122381CIP Medium 432yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=432

culture temp

@refgrowthtypetemperature
11908positivegrowth28
33778positivegrowth30
67770positivegrowth28
122381positivegrowth25-37
122381nogrowth10
122381nogrowth41
122381nogrowth45

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
122381NaClpositivegrowth8-10 %
122381NaClnogrowth0 %
122381NaClnogrowth2 %
122381NaClnogrowth4 %
122381NaClnogrowth6 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H6), MK-10(H2), MK-10(H4) (on vitamin-enriched ISP 2 medium), MK-10(H4), MK-10(H6), MK-10(H2), MK-10(H8), MK-10 (on glucose-yeast extract medium)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12238116947citrate-carbon source
1223814853esculin-hydrolysis
122381606565hippurate-hydrolysis
12238117632nitrate-reduction
12238116301nitrite-reduction

metabolite production

  • @ref: 122381
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12238115688acetoin-
12238117234glucose-

enzymes

@refvalueactivityec
122381oxidase-
122381beta-galactosidase-3.2.1.23
122381alcohol dehydrogenase-1.1.1.1
122381gelatinase-
122381catalase+1.11.1.6
122381gamma-glutamyltransferase-2.3.2.2
122381lysine decarboxylase-4.1.1.18
122381ornithine decarboxylase-4.1.1.17
122381phenylalanine ammonia-lyase-4.3.1.24
122381tryptophan deaminase-
122381urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122381--+--+---+-+--------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic locationisolation date
11908soil sample from a salt lakeChinaCHNAsia
67770Soil from a salt lakeChinaCHNAsiaXinjiang
122381Environment, Soil, salt lakeChinaCHNAsiaXinjiang1998

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Environmental#Terrestrial#Soil
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_75053.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_152;96_505;97_580;98_667;99_75053&stattab=map
  • Last taxonomy: Streptomonospora salina
  • 16S sequence: AF178988
  • Sequence Identity:
  • Total samples: 1
  • soil counts: 1

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
119081Risk group (German classification)
1223811Risk group (French classification)

Sequence information

16S sequences

  • @ref: 11908
  • description: Streptomonospora salina 16S ribosomal RNA gene, partial sequence
  • accession: AF178988
  • length: 1529
  • database: nuccore
  • NCBI tax ID: 104205

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomonospora salina DSM 44593GCA_014204715contigncbi104205
66792Streptomonospora salina strain DSM 44593104205.3wgspatric104205
66792Streptomonospora salina DSM 445932867995764draftimg104205

GC content

  • @ref: 67770
  • GC-content: 72.9
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesyes84no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes87.301no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no97.107no
69480spore-formingspore-formingAbility to form endo- or exosporesyes77.844no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes89.142no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno91.903no
69480flagellatedmotile2+Ability to perform flagellated movementno92.5no

External links

@ref: 11908

culture collection no.: DSM 44593, CCRC 16284, CCTCC 99003, YIM 90002, JCM 11823, BCRC 16284, CIP 107368, KCTC 19919, NBRC 105862

straininfo link

  • @ref: 80479
  • straininfo: 100971

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11321080Streptimonospora salina gen. nov., sp. nov., a new member of the family Nocardiopsaceae.Cui XL, Mao PH, Zeng M, Li WJ, Zhang LP, Xu LH, Jiang CLInt J Syst Evol Microbiol10.1099/00207713-51-2-3572001Actinomycetales/*classification/isolation & purification/ultrastructure, Bacterial Typing Techniques, DNA, Ribosomal, Molecular Sequence Data, RNA, Ribosomal, 16S, *Soil Microbiology, Terminology as Topic, *Water MicrobiologyGenetics
Phylogeny13130027Streptomonospora alba sp. nov., a novel halophilic actinomycete, and emended description of the genus Streptomonospora Cui et al. 2001.Li WJ, Xu P, Zhang LP, Tang SK, Cui XL, Mao PH, Xu LH, Schumann P, Stackebrandt E, Jiang CLInt J Syst Evol Microbiol10.1099/ijs.0.02543-02003Actinomycetales/*classification/genetics/isolation & purification/metabolism, Cell Wall/chemistry, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Diaminopimelic Acid/analysis, Microscopy, Electron, Scanning, Molecular Sequence Data, Peptidoglycan/chemistry, Phenotype, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sodium Chloride, Soil Microbiology, Vitamin K 2/chemistryGenetics
Phylogeny34355285Streptomonospora litoralis sp. nov., a halophilic thiopeptides producer isolated from sand collected at Cuxhaven beach.Khodamoradi S, Hahnke RL, Mast Y, Schumann P, Kampfer P, Steinert M, Ruckert C, Surup F, Rohde M, Wink JAntonie Van Leeuwenhoek10.1007/s10482-021-01609-42021Actinobacteria, DNA, Bacterial/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, *Sand

Reference

@idauthorscataloguedoi/urltitle
11908Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44593)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44593
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
33778Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4796
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
80479Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID100971.1StrainInfo: A central database for resolving microbial strain identifiers
122381Curators of the CIPCollection of Institut Pasteur (CIP 107368)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107368