Strain identifier

BacDive ID: 11205

Type strain: Yes

Species: Nocardiopsis exhalans

Strain Designation: ES-10.1

Strain history: DSM 44407 <-- M. Salkinoja-Salonen ES10.1.

NCBI tax ID(s): 163604 (species)

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General

@ref: 11740

BacDive-ID: 11205

DSM-Number: 44407

keywords: 16S sequence, Bacteria

description: Nocardiopsis exhalans ES-10.1 is a bacterium that was isolated from indoor air of a water damaged private house.

NCBI tax id

  • NCBI tax id: 163604
  • Matching level: species

strain history

@refhistory
11740<- M. Salkinoja-Salonen, Univ. Helsinki; ES-10.1
67770DSM 44407 <-- M. Salkinoja-Salonen ES10.1.

doi: 10.13145/bacdive11205.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Nocardiopsidaceae
  • genus: Nocardiopsis
  • species: Nocardiopsis exhalans
  • full scientific name: Nocardiopsis exhalans Peltola et al. 2002

@ref: 11740

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiopsaceae

genus: Nocardiopsis

species: Nocardiopsis exhalans

full scientific name: Nocardiopsis exhalans Peltola et al. 2002

strain designation: ES-10.1

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11740CZAPEK PEPTONE AGAR (DSMZ Medium 83)yeshttps://mediadive.dsmz.de/medium/83Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water
11740GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
11740TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
11740positivegrowth28
67770positivegrowth28

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-10(H6), MK-10(H8)

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
11740indoor air of a water damaged private houseFinlandFINEurope
67770Indoor air of the basement of a water-damaged building

isolation source categories

Cat1Cat2Cat3
#Engineered#Built environment#House
#Environmental#Air#Indoor Air

taxonmaps

  • @ref: 69479
  • File name: preview.99_7141.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_152;96_659;97_762;98_1213;99_7141&stattab=map
  • Last taxonomy: Nocardiopsis
  • 16S sequence: AY028325
  • Sequence Identity:
  • Total samples: 26
  • soil counts: 2
  • aquatic counts: 1
  • animal counts: 23

Safety information

risk assessment

  • @ref: 11740
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
11740Nocardiopsis exhalans strain ES10.1 16S ribosomal RNA gene, partial sequenceAY0283251457nuccore163604
124043Nocardiopsis exhalans gene for 16S rRNA, partial sequence.AB3687141457nuccore163604

External links

@ref: 11740

culture collection no.: DSM 44407, JCM 11759, NRRL B-24123, NBRC 100346, VTT E-062617

straininfo link

  • @ref: 80451
  • straininfo: 50616

literature

  • topic: Genetics
  • Pubmed-ID: 36326500
  • title: Complete Genome Sequence of Nocardiopsis exhalans Strain JCM 11759(T), Isolated from Indoor Air of a Water-Damaged Private House in Finland.
  • authors: Chen D, Mo P, Li B
  • journal: Microbiol Resour Announc
  • DOI: 10.1128/mra.00930-22
  • year: 2022
  • topic2: Phylogeny

Reference

@idauthorscataloguedoi/urltitle
11740Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44407)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44407
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80451Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID50616.1StrainInfo: A central database for resolving microbial strain identifiers
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy